RNA id: CI01000300_10675299_10675754.mRNA



Basic Information


Item Value
RNA id CI01000300_10675299_10675754.mRNA
length 2156
RNA type mRNA
GC content 0.33
exon number 2
gene id CI01000300_10675299_10675754
representative True

Chromosome Information


Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 10674589 ~ 10676912 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATAAAAGCAGTGTTGTGTCCATTTGTATTTTAAATAGAGAAAATTACATAAATTAGTTGTTTCATATGTAATCAAATTTAATAATGCATAATCCCATTCCAGAGTCTTACTGTGCTAAACGTTTTTCAGAGTTTCTTAAAGATACCCATAAACTAGCCATGATGAGGTTTGATATTCATAATGTTAGTAGCAGTAAAATAATTTGTTTTCTTTATAGAAGAAAAGGAAAGTTTACAAAATGTATCCTTGTGCAGTGTAGCATGGCATTGTAACTTTCCTGAGGTGTGATCTGAAAGGCAGCAGACAGGAAAAAAATATAGACAAATTCGGAACTGGTAAAATTTTTCGATGATATAACGAAATATTTGTAATTTATATGTCAGCAAAGATGCTTTTGGCGCCTAGATGAAGAGTAGAGCCTAACCAGAAGAGTCTAACAGGGCCATGCTACCGATACTACCCAACTAAACTTGACCTTTTGTCGCAGGCAGTGGCAAAGCAGTTAATGAGTAACGCACGACCTCGTGTGGTTATTGCTTTTTTTCTGTCATCACAGTGGTTATTTGACTCCAGATCAATAGGTGTCGCAGTGTAAAAGCCCGATATTTATGTCGAGTGTTCTTGAGTTCGCTTTGCACTCTGGGAGGTTTGTCCTCTTCAGATGTCATTGTAAATTCTACTTTATTTGAAAATTAATATAAAACCAGTATGTCTGGATACACAGCGGATGAAAAACTCCGCTTTGAGCAGTTAGCAAAGCTTCGGCGTCAATGGCTTAAAGATCAGGAGCTCAGCCCTCGAGAGCCAGTCACTGCACCCAAAACACCCGGCCGCATTGAGCGATTCTGGGCTGGATTCCTGGAGCCCAAGACACTCTGGAGACTTTATACATTTAAAGCCTATAATGCCAGTGTTTTTGCCATCACGCGGATTCTGATCCCAGCCTGGGTCGTGCATTACTATATGAAGTACCACGTCGCTGTAAGTGCATACTGACATACTGTTTCTTCAAGTGTGACTTGCTTTCTTTGATTCAATTACCTAAGAATTACCGTGACAATTATAACCTTCGTGTCATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCATAAGAATGTACATTATTTTATGAAAAGTTATGAAATTACTTTAAAAATGTGGGTACAACACTCATGTCATGATTCGGTTCAATACTATACTGATCATGATACTTTAAACAAAGTCAAAATAGAGTTGAAGGTTTTTTTATTATTTGTAACACTTTTAAAGCCCTTTGTTGTTAACATTAGTTAATGCATTAACTAACATGAACTAACAATGAGCAGTATATTTTTAAAGCATTTATTAATCTTTGTTAATGTTAGTAAAATGTTATAGTTTTTTTTTTTTTCATGTTCACACAGTGCATCAACAAATGTTTAACAATTACAATTTGATTTTAATAATGTATTGGTAAATGTTAAAATTAACTAAATTTACTTTATTTTAACTCTGTTTACTTCATATTAACTAATGTAGTTAACTAATCTTAATAAATGAAACCTTATTTTAAATTGTTACCAAATTATTAGTTCTAGGGTATATGATAAACAGTTATCAAAAAGTACTGTTAATTAAAATGCTAAATTTGGTATTACATCAGGCGTGGACTTGAATAGGCTTAAACTTGCACTCACCAATGTACAGGGCAACGCTGACACCAGAATAGAAATATTCATCATTCTGCTTGGCTAAAAATACAAAATGATATGCTGACACTCTGTCTCTGACTACAAACATTTAAAGTTATAAATAATGTATTTTTATTAAAAAATATATTGTATATTTACTTTATTATTCATAATTAATAAACATGGAAGCTCAAATGTGCAGAGGTGTTTCCAGAGTTTGATAATCACAGATCAGCATCAGCATCAAAACATTCATATTTATTTATTTGTTTTCTTTACTCATAGAATGTAGAAAACACTATTGTAAGTATGTGCAGCAGATCATTTCATTAGTTCAATATTAAAATGTAAGCTTTTTTTTTTTTTTTTTAGATATCAAAACTGGTTACTGTTTGGGTGATGACATTGACAAACTCCATATTTTTAAGTTTATATTTTATTTGACACTTGACCATACTTCATTTCTATTAAAATTTCTGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU475997 lncRNA upstream 324 10646191 ~ 10648902 (+) True G414452
TU476001 lncRNA upstream 41009 10632727 ~ 10633580 (+) False G414455
TU476003 lncRNA upstream 41009 10632727 ~ 10633580 (+) True G414455
TU475986 lncRNA upstream 118170 10555288 ~ 10556419 (+) True G414444
TU475972 lncRNA upstream 245445 10428815 ~ 10429144 (+) True G414432
TU476041 lncRNA downstream 23872 10700784 ~ 10701961 (+) True G414488
TU476048 lncRNA downstream 50328 10727240 ~ 10727441 (+) True G414495
TU476049 lncRNA downstream 56704 10733616 ~ 10738720 (+) False G414496
TU476050 lncRNA downstream 56704 10733616 ~ 10738720 (+) True G414496
TU476466 lncRNA downstream 63825 10740737 ~ 10741038 (+) True G414840
CI01000300_10661680_10669987.mRNA mRNA upstream 3183 10661680 ~ 10671406 (+) False CI01000300_10661680_10669987
CI01000300_10604458_10604787.mRNA mRNA upstream 69556 10604458 ~ 10605033 (+) False CI01000300_10604458_10604787
CI01000300_10496235_10498777.mRNA mRNA upstream 175645 10496174 ~ 10498944 (+) True CI01000300_10496235_10498777
CI01000300_10445111_10492819.mRNA mRNA upstream 181047 10445111 ~ 10493542 (+) True CI01000300_10445111_10492819
CI01000300_10401994_10404248.mRNA mRNA upstream 269914 10401565 ~ 10404675 (+) True CI01000300_10401994_10404248
CI01000300_10682604_10685243.mRNA mRNA downstream 4405 10681317 ~ 10685274 (+) True CI01000300_10682604_10685243
CI01000300_10688627_10696530.mRNA mRNA downstream 11715 10688627 ~ 10696530 (+) True CI01000300_10688627_10696530
CI01000300_10764813_10766212.mRNA mRNA downstream 87221 10764133 ~ 10766249 (+) True CI01000300_10764813_10766212
CI01000300_10854388_10857566.mRNA mRNA downstream 177476 10854388 ~ 10857574 (+) True CI01000300_10854388_10857566
CI01000300_10896258_10905139.mRNA mRNA downstream 219346 10896258 ~ 10905260 (+) True CI01000300_10896258_10905139
TU475996 other upstream 11102 10646191 ~ 10663487 (+) False G414452
TU476000 other upstream 69827 10599936 ~ 10604363 (+) True G414454
TU475776 other upstream 300691 10369911 ~ 10373898 (+) True G414249
TU475774 other upstream 300752 10369911 ~ 10373837 (+) False G414249
TU474898 other upstream 1725986 8944483 ~ 8948603 (+) True G413459
TU476886 other downstream 1026572 11703484 ~ 11703623 (+) True G415198

Expression Profile