RNA id: TCONS_00019522


Basic Information

Item Value
RNA id TCONS_00019522
length 3803
RNA type mRNA
GC content 0.42
exon number 3
gene id XLOC_009759
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 12632428 ~ 12639753 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attttatagcaGAAAGAAAAACTCGCCCACACACGGCGCATGCGCTCAAAACGTTAATAGTTTATGTGCGCAAAAACACTACGTATTTTACGCAGGGTCGTATTCCCGAATGAGGATTGGTGGAAATTACATTCCATGTTGAAGAGACAACGCTGTTCCATAAATGCCTCAAACGCTGCAAGTAACATCGACTAGAGGAGGGCATTTCTGCAGCATTTTGTATTTAAAGCAATACGTGCGTCTCTGAAAATCAGGTAAAATGGTACGATTGGATCTTGCTGATGTAGTTTTGCGGAGGATGCAGGAGAAGGACATTGAAGCAGTAAAGGCTCTTATTAAGGAAGGATGTGAGGGAACGGAGAACCGCCTGATTCTTCACCTTCTGACCCGTCCGCTTGCTCTCCTCCTGCTGGCCATCCTCTCCTCCATCCTGCGCTGCGTGCTGCACTCTTTCGTTTTAGCCTTGGTTATTCCCGTCTTCATCTCTGTCATCTACCTCAAGCTCACCATCCCGCGATCGGCAGGCATCTTGGGCTCATGCAGACCATACTGGGACTACATTGGCAGCAGCTACCATGCAGACACAGAACCAGATTTACCCAATCCTCACCTGGGCAGAGCCAAGCTGACTACCAACCAGGAGAAAACCAGACGGCGCAAAAAGGCCAAAGAGAAGGAGAAGATGAATGAGAGAGAGCAGGTGGATGAAGATGAGCTGAAGCAGAGGGCCAAGGTTGCTGGAGAGGTGTGGGTGGCAGACTCTGATGGGGAGATTGTGGGATGCGTGGCTAGAGATGGTTGGAGTCGGGACGGTGTTTGTAGGGTCTGCAGGCTGGTGGTCCAATGTTGGTACCGCAGAGAGGGACTGGGCAGACTGTTGGTGCAGGGCCTGGAGTCAAGAACAAAGCAGAAAGGCGTATGCCGGGTCTATGCACACGTGCCAATCCCTTCCAAAGTGGGAGAAGCTTTTTTTAGGAGGCTGGGTTATCGTCTGCAGGGTGAGACCGCAGGGattgaggaagaggaagaggacgATTATGAAGACCCAGAGAAGGGCTGGCTGGGGTACCCTTTAACTAAAGTGTTTGTTAAAGATCTTTAGTGGGATCGAAAGGATTTAGAGAAGCTGATGAAGAATGCAAGGAATATTCTGGATTCAAAACAAGTTAAACTCTTTCAGCCTGGAATTTTCAATATCATGATTGTCTCATGATAGGTTGGGTGTTAAGACCAACTGATTAGATTAGATTCGTATTTGTGTGGTGGGACGTCCcagcctattgaccttattctgcagtatggaagtgcgctcgtttttatGATTGTTTTAGAATTTTCGACACAGtgtcctatgggagaaatgactagcaaTAATAAACATCAGAAAACGGCCAAACTacctgctctacaaacaagtttgTTCGTGACTtgacaaagtaaaataatataattcgAAAAATATCagattgcaacatcaagcagaataacaagctgtttttaacatctaaaaatgaatatgcgtatttcacgtggccgccattttaaaaaacgaaagcaaggctgcggtgggaagaaacctggaagtataggatcagcagtacagtaaacattgcaacaacataccgtagactacaaacctccagctgttgccgtgaTTTCAAAGTGCAGATATTGTGGAAACAACACTTTAATattcagttaagtttaattaagAATTTAAAAGCATATTATGCATCAAACAAAATtccaatctctttaagagtaatacgGTTAAGTGTCCTCCTAAGCTTTAGTTCATGGCACCAGGCAAGTACAGTGGGgacgcttccctgcttcagcttaagcctagttcacactagaggattttaagctcgatttggaagttaacgagctcgccgaacagatcgggctgtgatcgggaagaaatctgcgggtgctcggcgctcttcatgtgtgaactactgaacaacgcatcaacgaggctcgctgacgcgtcgcagACACCTCGCAGAtggaaatccaacatttagcatgcttaatattccagagcagtcagccgactcaaccccacgtgtggtcagatgtagtgacgagctgcagccaatgagagaaaatgcctgtgtgctcaggagctcaacagaaacctctgtgattggtcagaatgggcttCAACGCTTTCGCTTCATTCTGtgttaacacagacatgagagtaggctatattaacagtggaactagaattctgtaactataagaattaccatactgGTCATTCtaaccgttctcatataaaacgccatattgtcacaacatatttacattcaaagctattattgagatattaaaattaagctttgaatgtctggcatcatatttaatgacaccattaccctaaaaatataatctttttttggtaatacagcctataaatatgcaGTTAAGATACTAGACCAtgcaaaggtcttggctttcattttcactttcaaacaggagctatttcacggcacagaatatgctgttttgaaagatatctgaagtaaattgatgtttttgccatcagaaagttttgtttatgttagcaggaagttgttaggcaaaaatgcacacatatttaaagtcacagtgaaaagtatcagacatgcatgcagtcattttgaccaatatcgtaattttaaggcagaaatgctcagctctttactgttttgtaataaaaaaaatgacaatgtcagaaagaaatacactgatagttagaaaacggcagggtgttatttgttagttttatttcaaagagttatacaattacaaaaattaattaaaaactctctgtgtatctatccactggaaccttgcagatgagtgattaatccgctgataaatccgctgatttgatgatgtttttaaatgctttctccaaagcttgaaacgctgtcagtgatgtaatcagcacacaagcagccaatagtgttcagctttttctgatgactcctctctcaaattttcattggctgtggtttggtagcttgaatgagctgatggggaatgagttgttgtcagatcatgtagtgtgtccctcttgtggatcattcacagagtgttgcgtagtgtgaacaccacagagattaaaagacacaatgtcaagtcatgtagtgtgaacggcacagcgatctgctgatgtttaaaatcctgtagtgtgaactaggctttatgTTACCCCGTGAgcaataaaacactgcagtcctctgtagcacacccttgtgttgtctgtaatagtgttgtcccggtacagAAATTTCAAAGACAACCATTTCTGTGATTggttgtgaaggtcatcagttcatcgATCCTCATTGAGTGCAAGTAGAGATACACGGACAATGGAGCGTTTAAAGCCGCGAAGATCAGTGGagtcatcagcggatcgctcatcTGTGTTTGCATTCTGTAAACAATGGTGaagtgcagtgaactgatgaccttcacggccaatcacaaacgtttctgttgagcactggggtccgttctttgtacgtggattactcagttagctggatttggtaattgacgatttgacatgatccaggatcatgTTGTCCaaaagttgttgtcatagcaacagttttgGTAGTTCAAACCTGCTCGGAAGTAGGCTCATTAAAACAGGATTAGATccggtcagttcaagcaaagattgTACTGAAAGTATGTAactaattctgatattttcttacagtaatagTTATATACACGTAAAAATAgagaatataatttttaaaactatatatatatatatatatatatatatatat

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0008080 N-acetyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-15 Predicted to enable N-acetyltransferase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human NAT14 (N-acetyltransferase 14 (putative)).

Ensembl:

ensembl_id ENSDART00000180537

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019512 lncRNA upstream 386304 12243583 ~ 12246124 (+) True XLOC_009752
TCONS_00021898 lncRNA upstream 493092 12117631 ~ 12139336 (+) True XLOC_009751
TCONS_00021897 lncRNA upstream 513902 12117631 ~ 12118526 (+) False XLOC_009751
TCONS_00019501 lncRNA upstream 922930 11708510 ~ 11709498 (+) True XLOC_009744
TCONS_00021687 lncRNA upstream 1048550 11580652 ~ 11583878 (+) True XLOC_009737
TCONS_00019528 lncRNA downstream 101159 12740912 ~ 12744284 (+) False XLOC_009761
TCONS_00019529 lncRNA downstream 107465 12747218 ~ 12748918 (+) True XLOC_009761
TCONS_00021899 lncRNA downstream 323207 12962960 ~ 12963877 (+) True XLOC_009764
TCONS_00021688 lncRNA downstream 472511 13112264 ~ 13115609 (+) True XLOC_009765
TCONS_00021900 lncRNA downstream 529119 13168872 ~ 13172698 (+) True XLOC_009766
TCONS_00019521 mRNA upstream 15273 12611362 ~ 12617155 (+) True XLOC_009758
TCONS_00019519 mRNA upstream 71706 12517535 ~ 12560722 (+) False XLOC_009757
TCONS_00019520 mRNA upstream 72086 12521872 ~ 12560342 (+) True XLOC_009757
TCONS_00019516 mRNA upstream 337960 12286148 ~ 12294468 (+) True XLOC_009754
TCONS_00019515 mRNA upstream 337965 12281032 ~ 12294463 (+) False XLOC_009754
TCONS_00019524 mRNA downstream 20724 12660477 ~ 12665652 (+) True XLOC_009760
TCONS_00019525 mRNA downstream 90558 12730311 ~ 12756528 (+) False XLOC_009761
TCONS_00019526 mRNA downstream 90585 12730338 ~ 12756528 (+) False XLOC_009761
TCONS_00019527 mRNA downstream 101037 12740790 ~ 12748603 (+) False XLOC_009761
TCONS_00019530 mRNA downstream 172461 12812214 ~ 12820810 (+) False XLOC_009762
TCONS_00019518 other upstream 251582 12380730 ~ 12380846 (+) True XLOC_009756
TCONS_00019517 other upstream 332142 12300169 ~ 12300286 (+) True XLOC_009755
TCONS_00019511 other upstream 386532 12241490 ~ 12245896 (+) False XLOC_009752
TCONS_00019500 other upstream 929091 11700646 ~ 11703337 (+) False XLOC_009744
TCONS_00019483 other upstream 1341545 11242560 ~ 11290883 (+) False XLOC_009731
TCONS_00019534 other downstream 784795 13424548 ~ 13441633 (+) False XLOC_009767
TCONS_00019535 other downstream 784798 13424551 ~ 13441595 (+) False XLOC_009767
TCONS_00019585 other downstream 3226471 15866224 ~ 15867165 (+) True XLOC_009800
TCONS_00019587 other downstream 3514571 16154324 ~ 16154458 (+) True XLOC_009803
TCONS_00019609 other downstream 4877195 17516948 ~ 17517082 (+) True XLOC_009816

Expression Profile

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