RNA id: TU468983


Basic Information

Item Value
RNA id TU468983
length 391
lncRNA type intronic
GC content 0.42
exon number 1
gene id G408149
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 229399 ~ 229789 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAAACACACAGTAAGCGGTCTGGGAAGTTGGTGAGGTGCCCCAGGTCTAAAAATGTCCTTGTGTGGTCCTCGAGACTTGTTGGACAGCTGGTAAATCCATTTAAAGGGGGAAAAAAAGAAAAATGCTACATCAATCTCGTCATAAAAAGCATTCTGAGCCGAGGTGCAAGTATATTTAACCACTTACATGACTCAGCCGAACACACGATCGCTGTCCAACACTCTTCTTCGTGAGCATTTGAGTGTGAGGTTAAAAACTTGCCTAGAGCGCTATCTGCTGTTAAAAACTAAGCTCAGAATCGATTCGAGAGAGAATCGCGATACATTTACAAAATATCAGAATCGAACCCGAATCATTGCATCACGAATCGAGAATCGATATATTGTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468918 lncRNA upstream 82164 146998 ~ 147235 (+) True G408104
TU468875 lncRNA upstream 198133 29140 ~ 31266 (+) True G408066
TU468868 lncRNA upstream 211111 17958 ~ 18288 (+) True G408059
TU468867 lncRNA upstream 212474 16689 ~ 16925 (+) True G408058
TU468865 lncRNA upstream 214230 14895 ~ 15169 (+) True G408056
TU469004 lncRNA downstream 49011 278800 ~ 279317 (+) True G408162
TU469005 lncRNA downstream 58865 288654 ~ 288963 (+) True G408163
TU469008 lncRNA downstream 64761 294550 ~ 294974 (+) True G408166
TU469013 lncRNA downstream 90820 320609 ~ 320843 (+) True G408171
TU469014 lncRNA downstream 91088 320877 ~ 321076 (+) True G408172
CI01000300_00180177_00181561.mRNA mRNA upstream 47782 180120 ~ 181617 (+) True CI01000300_00180177_00181561
CI01000300_00150486_00160308.mRNA mRNA upstream 68884 150486 ~ 160515 (+) True CI01000300_00150486_00160308
CI01000300_00103395_00123529.mRNA mRNA upstream 105870 103395 ~ 123529 (+) True CI01000300_00103395_00123529
CI01000300_00003224_00007587.mRNA mRNA upstream 221365 3224 ~ 8034 (+) True CI01000300_00003224_00007587
CI01000300_00313257_00313598.mRNA mRNA downstream 83468 313257 ~ 313641 (+) True CI01000300_00313257_00313598
CI01000300_00324861_00371897.mRNA mRNA downstream 94777 324566 ~ 372421 (+) True CI01000300_00324861_00371897
CI01000300_00373895_00378177.mRNA mRNA downstream 144106 373895 ~ 378403 (+) True CI01000300_00373895_00378177
CI01000300_00380880_00388140.mRNA mRNA downstream 151091 380880 ~ 388565 (+) True CI01000300_00380880_00388140
CI01000300_00390712_00395191.mRNA mRNA downstream 160822 390611 ~ 395743 (+) True CI01000300_00390712_00395191
TU469422 other downstream 746811 976600 ~ 977099 (+) True G408510
TU469410 other downstream 787278 1017067 ~ 1020734 (+) True G408498
TU469837 other downstream 1403241 1633030 ~ 1634969 (+) True G408910
TU469855 other downstream 1520111 1749900 ~ 1759036 (+) False G408928
TU469856 other downstream 1520111 1749900 ~ 1759036 (+) True G408928

Expression Profile