RNA id: TU469013


Basic Information

Item Value
RNA id TU469013
length 235
lncRNA type inter_gene
GC content 0.26
exon number 1
gene id G408171
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 320609 ~ 320843 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTAAATTTACTTAATTTTAAGTAAATATGTTTTAAAATCATAAGATGTGATTTTGTTTTATTCAGTGTTACTATCAGCAAACACTAACAGGTACATTAGTGTTAGTATTTTGAAGTATTAACTGTCCATACATTGCACTTTAAAAAGAATCTGTTGAGGCTCTTGTTGGTGAATAGAACATATTTTTTTAACTATATTTTTTCTTTGTATCTGTCAAAATAGTACAAGATTATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU469008 lncRNA upstream 25635 294550 ~ 294974 (+) True G408166
TU469005 lncRNA upstream 31646 288654 ~ 288963 (+) True G408163
TU469004 lncRNA upstream 41292 278800 ~ 279317 (+) True G408162
TU468983 lncRNA upstream 90820 229399 ~ 229789 (+) True G408149
TU468918 lncRNA upstream 173374 146998 ~ 147235 (+) True G408104
TU469014 lncRNA downstream 34 320877 ~ 321076 (+) True G408172
TU469050 lncRNA downstream 52057 372900 ~ 373116 (+) True G408197
TU468964 lncRNA downstream 120609 441452 ~ 475962 (+) False G408141
TU469078 lncRNA downstream 129695 450538 ~ 461022 (+) True G408216
TU468974 lncRNA downstream 131889 452732 ~ 475962 (+) False G408141
CI01000300_00313257_00313598.mRNA mRNA upstream 6968 313257 ~ 313641 (+) True CI01000300_00313257_00313598
CI01000300_00226653_00303160.mRNA mRNA upstream 17449 226653 ~ 303160 (+) True CI01000300_00226653_00303160
CI01000300_00180177_00181561.mRNA mRNA upstream 138992 180120 ~ 181617 (+) True CI01000300_00180177_00181561
CI01000300_00150486_00160308.mRNA mRNA upstream 160094 150486 ~ 160515 (+) True CI01000300_00150486_00160308
CI01000300_00103395_00123529.mRNA mRNA upstream 197080 103395 ~ 123529 (+) True CI01000300_00103395_00123529
CI01000300_00324861_00371897.mRNA mRNA downstream 3723 324566 ~ 372421 (+) True CI01000300_00324861_00371897
CI01000300_00373895_00378177.mRNA mRNA downstream 53052 373895 ~ 378403 (+) True CI01000300_00373895_00378177
CI01000300_00380880_00388140.mRNA mRNA downstream 60037 380880 ~ 388565 (+) True CI01000300_00380880_00388140
CI01000300_00390712_00395191.mRNA mRNA downstream 69768 390611 ~ 395743 (+) True CI01000300_00390712_00395191
CI01000300_00422911_00432735.mRNA mRNA downstream 101748 422591 ~ 432772 (+) True CI01000300_00422911_00432735
TU469422 other downstream 655757 976600 ~ 977099 (+) True G408510
TU469410 other downstream 696224 1017067 ~ 1020734 (+) True G408498
TU469837 other downstream 1312187 1633030 ~ 1634969 (+) True G408910
TU469855 other downstream 1429057 1749900 ~ 1759036 (+) False G408928
TU469856 other downstream 1429057 1749900 ~ 1759036 (+) True G408928

Expression Profile