RNA id: TCONS_00019528


Basic Information

Item Value
RNA id TCONS_00019528
length 641
lncRNA type retained_intron
GC content 0.47
exon number 3
gene id XLOC_009761
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 12730311 ~ 12756528 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACTGATGGAGTATCTGATAAAGACGGGTTCAGAGCGCGTAGCACAGCAATGCAGGGAAAACATCTACGCCGTTCAAACGCTTAAAGACTTCCAGTACATAGACAGAGACGGCAAAGACCAGGGTGTGAATGTACGGGAAAAGGCCAAGCAACTGGTGACTCTGCTAAAAGACGAGGAGAGGCTACGAGAGGAGAGGATCCATGCACTCAAGACCAAAGAGAAGATGGCACAGACCAGCAGTGGGGGAGGAGGAGTGCACTCGGGAGCAGACTCTGATCAGGCGTGGCCCCAGAGCTCCGGTGAGGAGGACCTGCAGCTCCAGCTGGCACTGGCCATGAGCAAGGAGGAGGCGGAGCAGGTAAAGTCTCAGCCAATCAGCAATTAGGTTCAGGCTGCAGGTAACGTGTAGTACTGACGTGGTTCAGAGTCTGAGGAAGATGATAGTTGTTCTACTAGAAGTGCATTTTTAAGAGACCTAAATGTATAGGATGCTATACAGTTAGTTGGTTGTTTGTACAAAATAAACGCATCCTTTTAGTCCTAAGGGTGTTGTTCATTTTGCGTATTGCCCAGTTGACTGTACAGTATCCTgtttattacatggctacttatcaaataaatacattacattaatttgagt

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0005768 endosome cellular_component
GO:0030125 clathrin vesicle coat cellular_component
GO:0005886 plasma membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005543 phospholipid binding molecular_function
GO:0030276 clathrin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2680 Predicted to enable clathrin binding activity and phospholipid binding activity. Predicted to be involved in endocytosis. Predicted to be located in cytoplasm. Predicted to be part of clathrin vesicle coat. Predicted to be active in endosome and plasma membrane. Orthologous to human EPN1 (epsin 1).

Ensembl:

ensembl_id ENSDART00000134612

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019512 lncRNA upstream 494788 12243583 ~ 12246124 (+) True XLOC_009752
TCONS_00021898 lncRNA upstream 601576 12117631 ~ 12139336 (+) True XLOC_009751
TCONS_00021897 lncRNA upstream 622386 12117631 ~ 12118526 (+) False XLOC_009751
TCONS_00019501 lncRNA upstream 1031414 11708510 ~ 11709498 (+) True XLOC_009744
TCONS_00021687 lncRNA upstream 1157034 11580652 ~ 11583878 (+) True XLOC_009737
TCONS_00019529 lncRNA downstream 2934 12747218 ~ 12748918 (+) True XLOC_009761
TCONS_00021899 lncRNA downstream 218676 12962960 ~ 12963877 (+) True XLOC_009764
TCONS_00021688 lncRNA downstream 367980 13112264 ~ 13115609 (+) True XLOC_009765
TCONS_00021900 lncRNA downstream 424588 13168872 ~ 13172698 (+) True XLOC_009766
TCONS_00021689 lncRNA downstream 755077 13499361 ~ 13501965 (+) True XLOC_009768
TCONS_00019524 mRNA upstream 75260 12660477 ~ 12665652 (+) True XLOC_009760
TCONS_00019523 mRNA upstream 101159 12632428 ~ 12639753 (+) False XLOC_009759
TCONS_00019522 mRNA upstream 101159 12632428 ~ 12639753 (+) True XLOC_009759
TCONS_00019521 mRNA upstream 123757 12611362 ~ 12617155 (+) True XLOC_009758
TCONS_00019519 mRNA upstream 180190 12517535 ~ 12560722 (+) False XLOC_009757
TCONS_00019530 mRNA downstream 67930 12812214 ~ 12820810 (+) False XLOC_009762
TCONS_00019531 mRNA downstream 68188 12812472 ~ 12821768 (+) True XLOC_009762
TCONS_00019532 mRNA downstream 91859 12836143 ~ 12866551 (+) True XLOC_009763
TCONS_00019533 mRNA downstream 680250 13424534 ~ 13453818 (+) False XLOC_009767
TCONS_00019536 mRNA downstream 683683 13427967 ~ 13452967 (+) True XLOC_009767
TCONS_00019518 other upstream 360066 12380730 ~ 12380846 (+) True XLOC_009756
TCONS_00019517 other upstream 440626 12300169 ~ 12300286 (+) True XLOC_009755
TCONS_00019511 other upstream 495016 12241490 ~ 12245896 (+) False XLOC_009752
TCONS_00019500 other upstream 1037575 11700646 ~ 11703337 (+) False XLOC_009744
TCONS_00019483 other upstream 1450029 11242560 ~ 11290883 (+) False XLOC_009731
TCONS_00019534 other downstream 680264 13424548 ~ 13441633 (+) False XLOC_009767
TCONS_00019535 other downstream 680267 13424551 ~ 13441595 (+) False XLOC_009767
TCONS_00019585 other downstream 3121940 15866224 ~ 15867165 (+) True XLOC_009800
TCONS_00019587 other downstream 3410040 16154324 ~ 16154458 (+) True XLOC_009803
TCONS_00019609 other downstream 4772664 17516948 ~ 17517082 (+) True XLOC_009816

Expression Profile

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