RNA id: TU469317



Basic Information


Item Value
RNA id TU469317
length 222
lncRNA type antisense_over
GC content 0.36
exon number 1
gene id G408420
representative True

Chromosome Information


Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 681413 ~ 681634 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTATAAGATGACCAAAACTTGTCAGCGGAATCCGTGTCTTCACGGGGGAGGTCGGCATGTCTGTAGCACAAAATACATATTTTAAAACGTGTATTGCTGCAAATCAAAACAAATGACCATGGAAATATTAGTATGTCAGTCTTGAAATGTATATAAAACCTCAACACTTACTGTATTACTCTAAAAATACAGTTTCTACAAGGGCATACTTCGGTTGTTTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU469311 lncRNA upstream 11071 670104 ~ 670342 (+) True G408418
TU469307 lncRNA upstream 14680 666506 ~ 666733 (+) True G408414
TU469306 lncRNA upstream 15147 666027 ~ 666266 (+) True G408413
TU469110 lncRNA upstream 128650 551499 ~ 552763 (+) True G408239
TU469109 lncRNA upstream 130574 550480 ~ 550839 (+) True G408238
TU469335 lncRNA downstream 16551 698185 ~ 703768 (+) True G408437
TU469367 lncRNA downstream 166603 848237 ~ 851139 (+) True G408459
TU469430 lncRNA downstream 269687 951321 ~ 951581 (+) True G408518
TU469432 lncRNA downstream 297013 978647 ~ 978992 (+) True G408520
TU469411 lncRNA downstream 297777 979411 ~ 980408 (+) True G408499
CI01000300_00509051_00514671.mRNA mRNA upstream 166662 508476 ~ 514751 (+) True CI01000300_00509051_00514671
CI01000300_00486146_00492357.mRNA mRNA upstream 188577 485894 ~ 492836 (+) True CI01000300_00486146_00492357
CI01000300_00422911_00432735.mRNA mRNA upstream 248641 422591 ~ 432772 (+) True CI01000300_00422911_00432735
CI01000300_00390712_00395191.mRNA mRNA upstream 285670 390611 ~ 395743 (+) True CI01000300_00390712_00395191
CI01000300_00380880_00388140.mRNA mRNA upstream 292848 380880 ~ 388565 (+) True CI01000300_00380880_00388140
CI01000300_00685357_00687717.mRNA mRNA downstream 1189 682823 ~ 688434 (+) True CI01000300_00685357_00687717
CI01000300_00695491_00729459.mRNA mRNA downstream 13633 695267 ~ 729746 (+) True CI01000300_00695491_00729459
CI01000300_00732352_00734178.mRNA mRNA downstream 50374 732008 ~ 734966 (+) True CI01000300_00732352_00734178
CI01000300_00740073_00744573.mRNA mRNA downstream 57462 739096 ~ 746407 (+) True CI01000300_00740073_00744573
CI01000300_00776177_00776812.mRNA mRNA downstream 94383 776017 ~ 776938 (+) True CI01000300_00776177_00776812
TU469422 other downstream 294966 976600 ~ 977099 (+) True G408510
TU469410 other downstream 335433 1017067 ~ 1020734 (+) True G408498
TU469837 other downstream 951396 1633030 ~ 1634969 (+) True G408910
TU469855 other downstream 1068266 1749900 ~ 1759036 (+) False G408928
TU469856 other downstream 1068266 1749900 ~ 1759036 (+) True G408928

Expression Profile