RNA id: TU469335


Basic Information

Item Value
RNA id TU469335
length 2744
lncRNA type intronic
GC content 0.36
exon number 3
gene id G408437
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 698185 ~ 703768 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATCTGGCCTCCACTTGTCTATGCACATTTGCAGATTGAACAGAGTGAACAGCCTGCACTTTTCCTTGTGCCAAAATTACATTTCTGTATTCACTCAAGAATCATTGTCAATCATTTAGTCAATCATGTGGGCATTTAGTTGGTTTTTAAGGACACTATGAAATCCAAATTTGAGTGCAAAGGACAGAAAACAATGTTTCTCTAGTGATTTCATGGGTTCTTTAAATTCATTATATATATATATATTAGTATTTGTATTTGGTAGCAATGAAAAATAGAAGGCAAGAGAGGAGGTCAGTGCTGTGTGTCCCTGACCTGCTTCAGTTAACAAAGGGATGTGTTTGATACCAGCACAACAGCTATTTTTACCATTTAATTTTACTGGCAAATACTTGCAGGCTGAGACTCAATTGAAGAGAGAAAGAGAGTGCGACAATGCAAACAAGAGGTTGAAGAGAAGGCTACTGTTCAATTAACCAAGACATGCTTGACAAAATGCTTATATTAATGCCTTTGTTACAGCCACAGCCAAATACAATGCTTTTTAATAATGCCAGCTCATTAATTCATTCATTAACGTCATTGCTCTTTCTAACACTGCAAAACATGTACTTGATGTGCAACTGCGTGTATGTAAATCTATAAACCCAACCAGGTAGGTTCGTATTAAATTACACAGACTTGAACAAGATGGAACAGTGCCAAAACAGTTGATGTCTTTGTCATTCATTTCTGTTATCAATCCAATTCTTATCGTTTATATGTAAGTTTGGGGTATAAAAATCGTCTCAGGTTACGTATGTAACCATAGTTCCCTCGAAAGGGAAATGCATATACTTTGAATGAAGTAAAAAGCTGTCTGATATGTAAACAGTCCATTAGCAAAAATGAGTGCCAGCTAAAAAAAATTATTTTAAAGTTGGGTAATTAGAAACATTAGGTTGCAAAAAATATATATATTTTAGTGTTTGCCATCCCATGAAGTCTCTGATGTTCTGGTCTCTAGTTCTGGTCCCTTCTTTAGTTTGTTTTGTTCACTCATTTGTCTAATGAAACTTGTCAGACCTAAAAAATATTGCCACTAGACAGACAATGACTATGAAGTAAACAGTAACATTTAGTTGACAGTAGCATTATAAATAAATGTGCACAATTAATGGGACAGTGGATGCAATGTTTGGAAATGTTATGATAGTAACTGCATGGACACTGTGGTTGCTTAGTGAGTTTTAAAGGGACAGACAAACTGATAGCAGGCCTTTGCTACAGAACCCCGTCATCACTGACTGCATGAACCTTCTGTAATGACACAGCTGTAATGACTGGAGGGCAATAATTGAATGCAAAGATATAATTAATAAGGACCTTGACTCTAATTAAGATGCATGTAGCTGTGGGATTTAAGAGATTCCTTAATGAATGTGTGTGAAGTCCTAGTTTTGCCAGTTGTATGCTGTTTACGTACACTGTAATTCCTTTTATTGGTAGTGATTGCTAGGACAAGCATCACAAGGGATTTTAACAAACCACTAAAGTCAATAAATTTCGAAGCTGAGTTTAAAGTTAGCATGAAACGAAAGCTGTGATAGTCTATTCTTCGCTATTGTGACATTTATCCAAGTGAAACAGCTTCTTGAACAAGAAAAAATGTAGGACGGGACTTGATTTAGTCCATTGGGAATCGATTGGATGGTTGTGGTTTGCTATTGCTGTGATGTCATGTGATTGACAGGTTGTCCCGCCCTCCCGCCAGTAACCAAGTCATCGTAGAAGAGAAGAGGGGCCTCATTTATAAAATGTTGCACAGAAACCGTCCTAAATTTGATCTTATGATCATTTCTCCGATGTACGTACATGTGATTTATAGAATGAACGCACACACAGAAAACGAGCGTAAATCACAAATGATCTAGAACTTGCGAGCAGCTGAATGGTTTCAATTCTCCGCATTTTAAACGACACCTAATTAATGATTTAAGCATACGCACACTCTATGATCAAATCTGTGCATACGCACGCTTTATAAATGAGGCCCGAGATGGTGCTGCGAGAAGCAGGGGAGGTTATTTTGATAAAAGATTATGAGGGCACGTGAATTAAAAAAAATAATGATGTGCACAGATAAATAATTTATAATAAATGCTGCAACATTTCTTAAAAAATTTGATTGATGATTAGGGGTGTGACAAGACACTTAGCTCAGATGAGACGATATACGAGATTGGGTTCACGAGACAAGATTTTTGCACAGTATTTTTAAGAAATCCTCAATGACAAAATTCATGACTGGAAAAACAGTCTTCAGGTGCATTTGAAATGTTTTAACTAATCATCTTGAAATGAATGTCATTTCAGTTCTACTTTCCAAGTATGAATTATCATATGCATTGAAAGACAACAATATACAAGCACTGTAAAAGGTTTTGCCACAAACTCAACTAACTGGCTTCTCTCCTGTATGAGTTCACATGAGTTTCTTCAGACCTTACTGTACATGAATTATGAGCTTTCTGAACTTCTGATTGAGGCTGTGTGTAACCTCCTAATTGAACTCCTTTCCACAAATTAAACATAGAAATAAAAACAGTATAAATAACAAAAATAAATAACAGTTTTTTATTAGACTTATTAAGTGCAAACAATAAGTGCAACTATAATCAAAGTACTCTCTCTCAATATTCAAAGTGCAAACAGAGACCAGAGCTAAGAGGTGGTTACAACTACACAGCCCAACCTAAGATACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU469317 lncRNA upstream 16551 681413 ~ 681634 (+) True G408420
TU469311 lncRNA upstream 27843 670104 ~ 670342 (+) True G408418
TU469307 lncRNA upstream 31452 666506 ~ 666733 (+) True G408414
TU469306 lncRNA upstream 31919 666027 ~ 666266 (+) True G408413
TU469110 lncRNA upstream 145422 551499 ~ 552763 (+) True G408239
TU469367 lncRNA downstream 144469 848237 ~ 851139 (+) True G408459
TU469430 lncRNA downstream 247553 951321 ~ 951581 (+) True G408518
TU469432 lncRNA downstream 274879 978647 ~ 978992 (+) True G408520
TU469411 lncRNA downstream 275643 979411 ~ 980408 (+) True G408499
TU469413 lncRNA downstream 283426 987194 ~ 987647 (+) True G408501
CI01000300_00685357_00687717.mRNA mRNA upstream 9751 682823 ~ 688434 (+) True CI01000300_00685357_00687717
CI01000300_00509051_00514671.mRNA mRNA upstream 183434 508476 ~ 514751 (+) True CI01000300_00509051_00514671
CI01000300_00486146_00492357.mRNA mRNA upstream 205349 485894 ~ 492836 (+) True CI01000300_00486146_00492357
CI01000300_00422911_00432735.mRNA mRNA upstream 265413 422591 ~ 432772 (+) True CI01000300_00422911_00432735
CI01000300_00390712_00395191.mRNA mRNA upstream 302442 390611 ~ 395743 (+) True CI01000300_00390712_00395191
CI01000300_00732352_00734178.mRNA mRNA downstream 28240 732008 ~ 734966 (+) True CI01000300_00732352_00734178
CI01000300_00740073_00744573.mRNA mRNA downstream 35328 739096 ~ 746407 (+) True CI01000300_00740073_00744573
CI01000300_00776177_00776812.mRNA mRNA downstream 72249 776017 ~ 776938 (+) True CI01000300_00776177_00776812
CI01000300_00781242_00787814.mRNA mRNA downstream 76907 780675 ~ 788151 (+) True CI01000300_00781242_00787814
CI01000300_00807040_00826385.mRNA mRNA downstream 103078 806846 ~ 826435 (+) True CI01000300_00807040_00826385
TU469422 other downstream 272832 976600 ~ 977099 (+) True G408510
TU469410 other downstream 313299 1017067 ~ 1020734 (+) True G408498
TU469837 other downstream 929262 1633030 ~ 1634969 (+) True G408910
TU469855 other downstream 1046132 1749900 ~ 1759036 (+) False G408928
TU469856 other downstream 1046132 1749900 ~ 1759036 (+) True G408928

Expression Profile