RNA id: TCONS_00019530


Basic Information

Item Value
RNA id TCONS_00019530
length 2106
RNA type mRNA
GC content 0.49
exon number 11
gene id XLOC_009762
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 12812214 ~ 12821768 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTGAATCAAAATCCGAGGAAATACTTGCTGACTGCGTGTGAACATGAGATTTTCCAATAGGGGGCGCAGGCAGATACAAAACAATGCAATGAATCTAATTCATTCGTTTTATTTAACACTTTGTTCAGAATACGTCTGTTTACATATCGCGATTTCAAATGCATATGCATAATCCAGGAGTCTGCAGCAGGAATCCGAAATCCGTTAAATCAACTGCATGAAACGTAAAGGTGACCCGGAAGTAATTGGGAGTGGCCACGACCTTTTGTGGGGGGCACTCTTACGGCCTTTCAGAGATTTGGTGTAAAATGCTGGCTGTACTTAATGTATATCGGTATTTTTGAGGAAAACATTAGCGTTTACGCTAGCAGAGCACTTGTTTATTCCTATCCATTATGTGCTGCATGTATGCTTACTTTCGGTCTCTTTGAAAGCACGTTTTCCTCATGCTGGCCTTTGTATGTTCTGGACGCTTCTGGAAGACCTCATTTCGACTTCTGCAGCTCTCAATAACCTTCGCTTTGTTTTCATAGGACTACAATTTTTCTTATATCTACTGTAGATTCGCAGTCGCTTTGCGTTTGGTGTGAGTTTAATTTTCTGGTTTGCGAGATATTCGCAGCAGCTGCATTGCTAGCTGTTAGCTAGCTAGCTCGCTTCATATTCAGTCGGCGTGTCGGAGCTGCTGGAAAATGTCAGACTTTGACGAGTTTGAGAGACAGCTGACCGAAAACAAACAAGCGGACCGAGACAAGGAGAACAAGCACCACCGGCGCAGTGGCTCGAGGAGTCGCAGCAGAGACCGGGACAGGAAGAGAAGGAGCCGCGACAGAGACAGAGAAAGAAGAGGCAGTCGAGACCGACATGGAGACAGCAAAGACCGCAGACACAGACGCAGTCGTTCTCCACACCGTGAGAAGAAAAAGATTAAAGTGAAGAAATATTGGGATGTTCCTCCTCCTGGATTTGAACACATCACACCCATGCAGTACAAAGCCATGCAGGCTGCTGGTCAGATACCAGCCACTGCTCTGCTGCCCACAATGACCCCTGAGGGTCTGGCTGTGACCCCAACACCTGTTCCTGTCGTGGGAAGTCAAATGACTCGACAAGCCCGACGGCTGTATGTGGGCAACATCCCATTTGGAATCACAGAGGAGTCTATGATGGACTTCTTCAATGCTCAGATGCGTTTGGGAGGCCTGACTCAGGCCCCAGGCAACCCTGTTCTTGCTGTCCAGATCAACCAGGACAAGAATTTTGCCTTTTTGGAGTTCCGCTCTGTAGATGAGACGACACAGGCCATGGCATTTGATGGCATCATTTTCCAGGGACAGAGTTTAAAGATTCGCCGACCACATGACTACCAGCCTCTGCCAGGCATGAGCGAGAATCCAAGTGTCTACGTCCCAGGTTCTCTCCCTGTAGGCGTTGTGTCCACGGTGGTACCCGATTCGGCCCATAAACTCTTTATTGGGGGTCTGCCAAATTACCTCAATGATGACCAGGTCAAAGAATTGCTGACATCGTTTGGTCCTCTGAAGGCTTTCAATTTGGTGAAAGACAGCGCTACAGGCCTGTCTAAGGGCTATGCCTTCTGTGAATATGTTGACGTCAATATCAGTGACCAGGCCATCGCAGGGCTAAACGGGATGCAGCTTGGGGACAAGAAACTCCTGGTCCAGAGGGCAAGCGTCGGTTCCAAGAACACTACGCTGACGGGTATAAACCAGACTCCAGTCACACTTCAAGTTCCAGGCCTCATGAACAGCTCTGTGAACCAGATGGGCGGCATTCCCACAGAGGTGTTGTGTCTGATGAACATGGTGGCCCCAGAGGAGCTGCTGGATGATGAAGAGTATGAGGAGATTGTGGAAGACGTCAGAGACGAGTGCTCCAAATACGGCCAAGTCAAGAGCATCGAGATCCCACGGCCTGTCGACGGATTGGATATTCCTGGCACTGGAAAGATCTTTGTGGAGTTTATGTCAGTATTTGACTCCCAAAAGGCAATGCAAGGTTTGACTGGAAGAAAATTCGCCAACAGAGTGGTGGTGACTAAATACTGCGACCCTGATGCCTATCACCGCCGCGACTTCTGGTAG

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0046660 female sex differentiation biological_process
GO:0008380 RNA splicing biological_process
GO:0089701 U2AF complex cellular_component
GO:0005634 nucleus cellular_component
GO:0016607 nuclear speck cellular_component
GO:0000243 commitment complex cellular_component
GO:0071004 U2-type prespliceosome cellular_component
GO:0008187 poly-pyrimidine tract binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0030628 pre-mRNA 3'-splice site binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050706-131 Predicted to enable poly-pyrimidine tract binding activity and pre-mRNA 3'-splice site binding activity. Predicted to act upstream of or within RNA processing; cell differentiation; and female sex differentiation. Predicted to be located in nucleus. Predicted to be part of U2-type prespliceosome; U2AF complex; and commitment complex. Predicted to be active in nuclear speck. Orthologous to human U2AF2 (U2 small nuclear RNA auxiliary factor 2).

Ensembl:

ensembl_id ENSDART00000124875

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019529 lncRNA upstream 63296 12747218 ~ 12748918 (+) True XLOC_009761
TCONS_00019528 lncRNA upstream 67930 12740912 ~ 12744284 (+) False XLOC_009761
TCONS_00019512 lncRNA upstream 566090 12243583 ~ 12246124 (+) True XLOC_009752
TCONS_00021898 lncRNA upstream 672878 12117631 ~ 12139336 (+) True XLOC_009751
TCONS_00021897 lncRNA upstream 693688 12117631 ~ 12118526 (+) False XLOC_009751
TCONS_00021899 lncRNA downstream 142150 12962960 ~ 12963877 (+) True XLOC_009764
TCONS_00021688 lncRNA downstream 291454 13112264 ~ 13115609 (+) True XLOC_009765
TCONS_00021900 lncRNA downstream 348062 13168872 ~ 13172698 (+) True XLOC_009766
TCONS_00021689 lncRNA downstream 678551 13499361 ~ 13501965 (+) True XLOC_009768
TCONS_00021901 lncRNA downstream 791844 13612654 ~ 13614188 (+) True XLOC_009769
TCONS_00019525 mRNA upstream 55686 12730311 ~ 12756528 (+) False XLOC_009761
TCONS_00019526 mRNA upstream 55686 12730338 ~ 12756528 (+) False XLOC_009761
TCONS_00019527 mRNA upstream 63611 12740790 ~ 12748603 (+) False XLOC_009761
TCONS_00019524 mRNA upstream 146562 12660477 ~ 12665652 (+) True XLOC_009760
TCONS_00019523 mRNA upstream 172461 12632428 ~ 12639753 (+) False XLOC_009759
TCONS_00019532 mRNA downstream 15333 12836143 ~ 12866551 (+) True XLOC_009763
TCONS_00019533 mRNA downstream 603724 13424534 ~ 13453818 (+) False XLOC_009767
TCONS_00019536 mRNA downstream 607157 13427967 ~ 13452967 (+) True XLOC_009767
TCONS_00019537 mRNA downstream 862997 13683807 ~ 13706403 (+) False XLOC_009770
TCONS_00019538 mRNA downstream 864840 13685650 ~ 13706447 (+) False XLOC_009770
TCONS_00019518 other upstream 431368 12380730 ~ 12380846 (+) True XLOC_009756
TCONS_00019517 other upstream 511928 12300169 ~ 12300286 (+) True XLOC_009755
TCONS_00019511 other upstream 566318 12241490 ~ 12245896 (+) False XLOC_009752
TCONS_00019500 other upstream 1108877 11700646 ~ 11703337 (+) False XLOC_009744
TCONS_00019483 other upstream 1521331 11242560 ~ 11290883 (+) False XLOC_009731
TCONS_00019534 other downstream 603738 13424548 ~ 13441633 (+) False XLOC_009767
TCONS_00019535 other downstream 603741 13424551 ~ 13441595 (+) False XLOC_009767
TCONS_00019585 other downstream 3045414 15866224 ~ 15867165 (+) True XLOC_009800
TCONS_00019587 other downstream 3333514 16154324 ~ 16154458 (+) True XLOC_009803
TCONS_00019609 other downstream 4696138 17516948 ~ 17517082 (+) True XLOC_009816

Expression Profile

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