RNA id: TU469422



Basic Information


Item Value
RNA id TU469422
length 500
RNA type TUCP
GC content 0.35
exon number 1
gene id G408510
representative True

Chromosome Information


Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 976600 ~ 977099 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGAAATGCTTCCAGAGGTCATAGACCCTCTTCTCAATATCGTCAATTCATCTTTATCATTAGGATACGTACCAAAAACTTTTAAGCTGGCTATTATTAAACCTCTTATTAAAAAACCACAACTTGATCCTAGAGAATTAGTCAATTACAGGCCGATCTCAAATCTCACTTTTCTGTCAAAAATACTAGAAAAGGCAGTATCATCACAGCTATGTTCCTTTTTAGAAAGAAATGGTATCTGTGAGGATTTCCAGTCAGGATTTAGACCGTACCATAGTACTGAGACTGCTCTCATTAGAGTTACTAATGATTTGCTCTTATCATCAGATCGTGGTTGTATCTCTCTATTAGTGTTACTGGATCTTAGTGCAGCATTTGACACTATTGATCACAATATTCTTTTAAATAGACTCGAAAATTATGTTGGCATTAGTGGAATTGCATTGTCATGGTTCAAATCATACTTATCTGACCGTTATCAGTTTGTAGTAGTAAACGAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU469430 lncRNA upstream 25019 951321 ~ 951581 (+) True G408518
TU469367 lncRNA upstream 125461 848237 ~ 851139 (+) True G408459
TU469335 lncRNA upstream 272832 698185 ~ 703768 (+) True G408437
TU469317 lncRNA upstream 294966 681413 ~ 681634 (+) True G408420
TU469311 lncRNA upstream 306258 670104 ~ 670342 (+) True G408418
TU469432 lncRNA downstream 1548 978647 ~ 978992 (+) True G408520
TU469411 lncRNA downstream 2312 979411 ~ 980408 (+) True G408499
TU469413 lncRNA downstream 10095 987194 ~ 987647 (+) True G408501
TU469406 lncRNA downstream 15179 992278 ~ 992829 (+) True G408495
TU469433 lncRNA downstream 17991 995090 ~ 995498 (+) True G408521
CI01000300_00864011_00867698.mRNA mRNA upstream 107829 862740 ~ 868771 (+) True CI01000300_00864011_00867698
CI01000300_00807040_00826385.mRNA mRNA upstream 150165 806846 ~ 826435 (+) True CI01000300_00807040_00826385
CI01000300_00781242_00787814.mRNA mRNA upstream 188449 780675 ~ 788151 (+) True CI01000300_00781242_00787814
CI01000300_00776177_00776812.mRNA mRNA upstream 199662 776017 ~ 776938 (+) True CI01000300_00776177_00776812
CI01000300_00740073_00744573.mRNA mRNA upstream 230193 739096 ~ 746407 (+) True CI01000300_00740073_00744573
CI01000300_01115718_01128729.mRNA mRNA downstream 137699 1114798 ~ 1128760 (+) True CI01000300_01115718_01128729
CI01000300_01128973_01131417.mRNA mRNA downstream 151713 1128812 ~ 1131441 (+) True CI01000300_01128973_01131417
CI01000300_01225430_01228695.mRNA mRNA downstream 248331 1225430 ~ 1228987 (+) True CI01000300_01225430_01228695
CI01000300_01241607_01253459.mRNA mRNA downstream 264508 1241607 ~ 1254009 (+) True CI01000300_01241607_01253459
CI01000300_01272675_01273342.mRNA mRNA downstream 295576 1272675 ~ 1273753 (+) True CI01000300_01272675_01273342
TU469410 other downstream 39968 1017067 ~ 1020734 (+) True G408498
TU469837 other downstream 655931 1633030 ~ 1634969 (+) True G408910
TU469855 other downstream 772801 1749900 ~ 1759036 (+) False G408928
TU469856 other downstream 772801 1749900 ~ 1759036 (+) True G408928
TU470056 other downstream 1336310 2313409 ~ 2313894 (+) True CI01000300_02313596_02320912

Expression Profile