RNA id: TU469433


Basic Information

Item Value
RNA id TU469433
length 409
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G408521
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 995090 ~ 995498 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGGTAAGAATTACACAAGAGGGATTTAGCTCTCACCATTAAGGGTGTTTCAGTGTGTGTGCATGTACAATATCGCTGAAACATCTCTGTGGCAGAACAATTGGAGGATTTCCTTTTGGAAGCCTTTTTAAATTAAATATGCTCCTTTTATAAAGTGCTAGACCTGCAAAAATCATTCCAAATTTTAAGATGTTTGATATCTGCAGGCTGCAAAAGGGAAAGAACACAACTGATACAGTCTGTTGATGAATATTAACTTATAGAACAGACAAGGGGAACTAGACAATAATATTACATTTAAAACCCGGAACACACCAAGCCGACGGTGGCCGTCAGGCAGTTTTTGTTCATCGGCCAACTAAGTTTTCTAAGTGTGTTCCGCACTGTCGGCTGAAGTTGGTCCTCGTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU469406 lncRNA upstream 2261 992278 ~ 992829 (+) True G408495
TU469413 lncRNA upstream 7443 987194 ~ 987647 (+) True G408501
TU469411 lncRNA upstream 14682 979411 ~ 980408 (+) True G408499
TU469432 lncRNA upstream 16098 978647 ~ 978992 (+) True G408520
TU469430 lncRNA upstream 43509 951321 ~ 951581 (+) True G408518
TU469434 lncRNA downstream 82 995580 ~ 995973 (+) True G408522
TU469407 lncRNA downstream 3605 999103 ~ 999385 (+) True G408496
TU469405 lncRNA downstream 10180 1005678 ~ 1006915 (+) True G408494
TU469421 lncRNA downstream 60318 1055816 ~ 1066158 (+) True G408509
TU469414 lncRNA downstream 138673 1134171 ~ 1134489 (+) True G408502
CI01000300_00864011_00867698.mRNA mRNA upstream 126319 862740 ~ 868771 (+) True CI01000300_00864011_00867698
CI01000300_00807040_00826385.mRNA mRNA upstream 168655 806846 ~ 826435 (+) True CI01000300_00807040_00826385
CI01000300_00781242_00787814.mRNA mRNA upstream 206939 780675 ~ 788151 (+) True CI01000300_00781242_00787814
CI01000300_00776177_00776812.mRNA mRNA upstream 218152 776017 ~ 776938 (+) True CI01000300_00776177_00776812
CI01000300_00740073_00744573.mRNA mRNA upstream 248683 739096 ~ 746407 (+) True CI01000300_00740073_00744573
CI01000300_01115718_01128729.mRNA mRNA downstream 119300 1114798 ~ 1128760 (+) True CI01000300_01115718_01128729
CI01000300_01128973_01131417.mRNA mRNA downstream 133314 1128812 ~ 1131441 (+) True CI01000300_01128973_01131417
CI01000300_01225430_01228695.mRNA mRNA downstream 229932 1225430 ~ 1228987 (+) True CI01000300_01225430_01228695
CI01000300_01241607_01253459.mRNA mRNA downstream 246109 1241607 ~ 1254009 (+) True CI01000300_01241607_01253459
CI01000300_01272675_01273342.mRNA mRNA downstream 277177 1272675 ~ 1273753 (+) True CI01000300_01272675_01273342
TU469422 other upstream 17991 976600 ~ 977099 (+) True G408510
TU469410 other downstream 21569 1017067 ~ 1020734 (+) True G408498
TU469837 other downstream 637532 1633030 ~ 1634969 (+) True G408910
TU469855 other downstream 754402 1749900 ~ 1759036 (+) False G408928
TU469856 other downstream 754402 1749900 ~ 1759036 (+) True G408928
TU470056 other downstream 1317911 2313409 ~ 2313894 (+) True CI01000300_02313596_02320912

Expression Profile