RNA id: TU469414


Basic Information

Item Value
RNA id TU469414
length 319
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G408502
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 1134171 ~ 1134489 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGCGTTTTTTACTAGTGGTCCCATACTTTCTGGCCTCACTTTTTGATGTGAAGATGCCAAAGTCTTTAAAACAATACAGCAAAAGCAAAGCTACTCTGACTGAACCTAAAACCCAAACCTTATATAAATTTGCCATCCAAAAAGTAAATGAAGTTGTCCTACTGATGTAAATTAACAATCCAAAAAGTTGATTATAAAGGTCAGCACTTTTTATCCCATTCTATATCTTTTGCTCACCAAGATGGTCTCTATACTGTCAGGAAAAATGTACAAAGAATTGTTCAACAGCTTTTCATTTGGGAAGTGCCCTCAAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU469421 lncRNA upstream 68013 1055816 ~ 1066158 (+) True G408509
TU469405 lncRNA upstream 127256 1005678 ~ 1006915 (+) True G408494
TU469407 lncRNA upstream 134786 999103 ~ 999385 (+) True G408496
TU469434 lncRNA upstream 138198 995580 ~ 995973 (+) True G408522
TU469433 lncRNA upstream 138673 995090 ~ 995498 (+) True G408521
TU469437 lncRNA downstream 3935 1138424 ~ 1138656 (+) True G408525
TU469440 lncRNA downstream 6649 1141138 ~ 1141432 (+) True G408528
TU469441 lncRNA downstream 7382 1141871 ~ 1142105 (+) True G408529
TU469442 lncRNA downstream 7814 1142303 ~ 1142683 (+) True G408530
TU469443 lncRNA downstream 9455 1143944 ~ 1144236 (+) True G408531
CI01000300_01128973_01131417.mRNA mRNA upstream 2730 1128812 ~ 1131441 (+) True CI01000300_01128973_01131417
CI01000300_01115718_01128729.mRNA mRNA upstream 5411 1114798 ~ 1128760 (+) True CI01000300_01115718_01128729
CI01000300_00864011_00867698.mRNA mRNA upstream 265400 862740 ~ 868771 (+) True CI01000300_00864011_00867698
CI01000300_00807040_00826385.mRNA mRNA upstream 307736 806846 ~ 826435 (+) True CI01000300_00807040_00826385
CI01000300_00781242_00787814.mRNA mRNA upstream 346020 780675 ~ 788151 (+) True CI01000300_00781242_00787814
CI01000300_01225430_01228695.mRNA mRNA downstream 90941 1225430 ~ 1228987 (+) True CI01000300_01225430_01228695
CI01000300_01241607_01253459.mRNA mRNA downstream 107118 1241607 ~ 1254009 (+) True CI01000300_01241607_01253459
CI01000300_01272675_01273342.mRNA mRNA downstream 138186 1272675 ~ 1273753 (+) True CI01000300_01272675_01273342
CI01000300_01275725_01282289.mRNA mRNA downstream 140876 1275365 ~ 1282428 (+) True CI01000300_01275725_01282289
CI01000300_01303949_01305865.mRNA mRNA downstream 167418 1301907 ~ 1306339 (+) True CI01000300_01303949_01305865
TU469410 other upstream 113437 1017067 ~ 1020734 (+) True G408498
TU469422 other upstream 157072 976600 ~ 977099 (+) True G408510
TU469837 other downstream 498541 1633030 ~ 1634969 (+) True G408910
TU469855 other downstream 615411 1749900 ~ 1759036 (+) False G408928
TU469856 other downstream 615411 1749900 ~ 1759036 (+) True G408928
TU470056 other downstream 1178920 2313409 ~ 2313894 (+) True CI01000300_02313596_02320912
TU471035 other downstream 2137196 3271685 ~ 3272398 (+) True G409984

Expression Profile