RNA id: TCONS_00021899


Basic Information

Item Value
RNA id TCONS_00021899
length 866
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id XLOC_009764
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 12962960 ~ 12963877 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttttttaAgcgtttaaatcattttaatttagtattttctcACCAAATATTTTAACATTCTCCAGAAAGGCAGTGAATCAAATCACAGCCCAAACACAACAGTGGCCTACACAATATTTACACAAGAAATATTCAATATTTCTAAACTCTCTTAAAGAAACCCTCTATCATTTCAAATCCAAACAATATGTTCAGCATTTAAAATGGGTTAATAAGTAATTCCCACTTTAGCATATGATGACAACACTAAAACTAACAATTCACAGATCCCATGATATAaactaaaatgcttttattaaatCATCTACAGAAGTCAAGGCAATAGTTACAGATCTCTTATTTGCTCTAAAGTGTACGTCTACATAAATGAATCGTCAGTTGTGTGTGATTGTCAAATGTTCTTTCGATCCAGTGCAGTTTAATATGCTACAAATTCACAACGACATTCAGTCTTAAAAAGAGGCCTTTGTTACAAACAGTATTTTACTTCCTTTCCTCATATAAAAAACTATATCTTGCCTTACACTgtagtttttgtttctttttatgtaCTATGCATCATCTCAATGAAAAACGAGTGCGCTATAAACTTTCTCTTTAGCATGGCGAGGCGCtcatgcgcatgtgtgtgtggtaGTGTGGCGGTGGCACAGCAGCGGGCGGAGCGGACATGGGCATGGCCTGTGATGCCGCAGCTGGGCCGTGCGCCCCGGGGTGGAGGGGGTGGTTGTGTGGGTATGGAGCGGCAGAACCTGGAGATGGCAGCTGGTATCCAGTTCCTGAGGCGGGACTGGAGGCGGCGGTGATTCCTGGAGAGGACGTGCCCTGCTGCCCACTGGCCTTGGATGGGTGCTGTGGGTTCTGGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019529 lncRNA upstream 214042 12747218 ~ 12748918 (+) True XLOC_009761
TCONS_00019528 lncRNA upstream 218676 12740912 ~ 12744284 (+) False XLOC_009761
TCONS_00019512 lncRNA upstream 716836 12243583 ~ 12246124 (+) True XLOC_009752
TCONS_00021898 lncRNA upstream 823624 12117631 ~ 12139336 (+) True XLOC_009751
TCONS_00021897 lncRNA upstream 844434 12117631 ~ 12118526 (+) False XLOC_009751
TCONS_00021688 lncRNA downstream 148387 13112264 ~ 13115609 (+) True XLOC_009765
TCONS_00021900 lncRNA downstream 204995 13168872 ~ 13172698 (+) True XLOC_009766
TCONS_00021689 lncRNA downstream 535484 13499361 ~ 13501965 (+) True XLOC_009768
TCONS_00021901 lncRNA downstream 648777 13612654 ~ 13614188 (+) True XLOC_009769
TCONS_00019546 lncRNA downstream 891855 13855732 ~ 13856566 (+) False XLOC_009772
TCONS_00019532 mRNA upstream 96409 12836143 ~ 12866551 (+) True XLOC_009763
TCONS_00019531 mRNA upstream 141192 12812472 ~ 12821768 (+) True XLOC_009762
TCONS_00019530 mRNA upstream 142150 12812214 ~ 12820810 (+) False XLOC_009762
TCONS_00019525 mRNA upstream 206432 12730311 ~ 12756528 (+) False XLOC_009761
TCONS_00019526 mRNA upstream 206432 12730338 ~ 12756528 (+) False XLOC_009761
TCONS_00019533 mRNA downstream 460657 13424534 ~ 13453818 (+) False XLOC_009767
TCONS_00019536 mRNA downstream 464090 13427967 ~ 13452967 (+) True XLOC_009767
TCONS_00019537 mRNA downstream 719930 13683807 ~ 13706403 (+) False XLOC_009770
TCONS_00019538 mRNA downstream 721773 13685650 ~ 13706447 (+) False XLOC_009770
TCONS_00019539 mRNA downstream 721994 13685871 ~ 13706766 (+) False XLOC_009770
TCONS_00019518 other upstream 582114 12380730 ~ 12380846 (+) True XLOC_009756
TCONS_00019517 other upstream 662674 12300169 ~ 12300286 (+) True XLOC_009755
TCONS_00019511 other upstream 717064 12241490 ~ 12245896 (+) False XLOC_009752
TCONS_00019500 other upstream 1259623 11700646 ~ 11703337 (+) False XLOC_009744
TCONS_00019483 other upstream 1672077 11242560 ~ 11290883 (+) False XLOC_009731
TCONS_00019534 other downstream 460671 13424548 ~ 13441633 (+) False XLOC_009767
TCONS_00019535 other downstream 460674 13424551 ~ 13441595 (+) False XLOC_009767
TCONS_00019585 other downstream 2902347 15866224 ~ 15867165 (+) True XLOC_009800
TCONS_00019587 other downstream 3190447 16154324 ~ 16154458 (+) True XLOC_009803
TCONS_00019609 other downstream 4553071 17516948 ~ 17517082 (+) True XLOC_009816