RNA id: TU469501


Basic Information

Item Value
RNA id TU469501
length 366
lncRNA type intronic
GC content 0.41
exon number 1
gene id G408587
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 1252104 ~ 1252469 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAATTGCAAGTTTATATCCTGCAATTCTGATTTTATAACTGCAAATTAGCATTGGGTCACAAATAAGCAGAGCTGATGCTCATCGGTTGCGGGTCGACACAGGCGCAACTTGTTACATGTAATATACGGATAACATCTTCCTCTGGCATTCCAAAGAAATTAATACGAGTGGAAAATATTTTCTTCCTTCTACCACGCGCTCTCTGTTCTCTGCGTCGCCTCCTAGCAGCAACTATTGCAGCCGTGTCGCAAAACGGGTTAAGACATGCTTTTTTTGGGCATTAAATAATGGCGCAAATACCAGTAAATTGACTAGCGCAAACATTAGTAAATCGTGTTGCGTGATTCATTTAAATACTCTCCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU469500 lncRNA upstream 1921 1249980 ~ 1250183 (+) True G408586
TU469499 lncRNA upstream 7755 1244119 ~ 1244349 (+) True G408585
TU469417 lncRNA upstream 16890 1235002 ~ 1235214 (+) True G408505
TU469416 lncRNA upstream 19226 1232585 ~ 1232878 (+) True G408504
TU469419 lncRNA upstream 19619 1232284 ~ 1232485 (+) True G408507
TU469502 lncRNA downstream 2307 1254776 ~ 1254976 (+) True G408588
TU469521 lncRNA downstream 39347 1291816 ~ 1292458 (+) True G408607
TU469523 lncRNA downstream 72393 1324862 ~ 1325451 (+) True G408609
TU469528 lncRNA downstream 83335 1335804 ~ 1336027 (+) True G408614
TU469534 lncRNA downstream 128093 1380562 ~ 1380835 (+) True G408620
CI01000300_01225430_01228695.mRNA mRNA upstream 23117 1225430 ~ 1228987 (+) True CI01000300_01225430_01228695
CI01000300_01128973_01131417.mRNA mRNA upstream 120663 1128812 ~ 1131441 (+) True CI01000300_01128973_01131417
CI01000300_01115718_01128729.mRNA mRNA upstream 123344 1114798 ~ 1128760 (+) True CI01000300_01115718_01128729
CI01000300_00864011_00867698.mRNA mRNA upstream 383333 862740 ~ 868771 (+) True CI01000300_00864011_00867698
CI01000300_00807040_00826385.mRNA mRNA upstream 425669 806846 ~ 826435 (+) True CI01000300_00807040_00826385
CI01000300_01272675_01273342.mRNA mRNA downstream 20206 1272675 ~ 1273753 (+) True CI01000300_01272675_01273342
CI01000300_01275725_01282289.mRNA mRNA downstream 22896 1275365 ~ 1282428 (+) True CI01000300_01275725_01282289
CI01000300_01303949_01305865.mRNA mRNA downstream 49438 1301907 ~ 1306339 (+) True CI01000300_01303949_01305865
CI01000300_01331788_01335474.mRNA mRNA downstream 77890 1330359 ~ 1335569 (+) True CI01000300_01331788_01335474
CI01000300_01343814_01353541.mRNA mRNA downstream 91345 1343814 ~ 1355389 (+) True CI01000300_01343814_01353541
TU469410 other upstream 231370 1017067 ~ 1020734 (+) True G408498
TU469422 other upstream 275005 976600 ~ 977099 (+) True G408510
TU469837 other downstream 380561 1633030 ~ 1634969 (+) True G408910
TU469855 other downstream 497431 1749900 ~ 1759036 (+) False G408928
TU469856 other downstream 497431 1749900 ~ 1759036 (+) True G408928
TU470056 other downstream 1060940 2313409 ~ 2313894 (+) True CI01000300_02313596_02320912
TU471035 other downstream 2019216 3271685 ~ 3272398 (+) True G409984

Expression Profile