RNA id: TU469534


Basic Information

Item Value
RNA id TU469534
length 274
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G408620
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 1380562 ~ 1380835 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTACCATTAAAGTACCATTATGTAAACTTTAGGTACTAAAATGTACATTTAAGGTACTAATATGCACCTTTTAGGGGTAAATAAGGTACAAACGTGTACCTTTTGTAAAGGTGCCACTTCAGTGACAGATTTTGTAACTTTTTCTGAAAGTGTATGTATCCTAAACATACACAATTAAATAAAAATGTCATACTTTATTTGATATAATTACAGCTTAGTTGGAAATGATGCCCAATAAAAATATCTACTTTGATTTTTTTTTTTCTTCACAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU469528 lncRNA upstream 44535 1335804 ~ 1336027 (+) True G408614
TU469523 lncRNA upstream 55111 1324862 ~ 1325451 (+) True G408609
TU469521 lncRNA upstream 88104 1291816 ~ 1292458 (+) True G408607
TU469502 lncRNA upstream 125586 1254776 ~ 1254976 (+) True G408588
TU469501 lncRNA upstream 128093 1252104 ~ 1252469 (+) True G408587
TU469542 lncRNA downstream 61789 1442624 ~ 1442884 (+) True G408628
TU469548 lncRNA downstream 81320 1462155 ~ 1462416 (+) True G408634
TU469776 lncRNA downstream 105999 1486834 ~ 1487716 (+) True G408851
TU469813 lncRNA downstream 142015 1522850 ~ 1523234 (+) True G408888
TU469812 lncRNA downstream 153475 1534310 ~ 1538291 (+) True G408887
CI01000300_01373306_01377544.mRNA mRNA upstream 2914 1373220 ~ 1377648 (+) True CI01000300_01373306_01377544
CI01000300_01343814_01353541.mRNA mRNA upstream 25173 1343814 ~ 1355389 (+) True CI01000300_01343814_01353541
CI01000300_01331788_01335474.mRNA mRNA upstream 44993 1330359 ~ 1335569 (+) True CI01000300_01331788_01335474
CI01000300_01303949_01305865.mRNA mRNA upstream 74223 1301907 ~ 1306339 (+) True CI01000300_01303949_01305865
CI01000300_01275725_01282289.mRNA mRNA upstream 98134 1275365 ~ 1282428 (+) True CI01000300_01275725_01282289
CI01000300_01390134_01416227.mRNA mRNA downstream 8889 1389724 ~ 1416713 (+) True CI01000300_01390134_01416227
CI01000300_01419087_01421103.mRNA mRNA downstream 38252 1419087 ~ 1421332 (+) True CI01000300_01419087_01421103
CI01000300_01426499_01431069.mRNA mRNA downstream 45218 1426053 ~ 1431264 (+) True CI01000300_01426499_01431069
CI01000300_01480400_01484276.mRNA mRNA downstream 98999 1479834 ~ 1484713 (+) True CI01000300_01480400_01484276
CI01000300_01513060_01515885.mRNA mRNA downstream 132070 1512905 ~ 1515885 (+) True CI01000300_01513060_01515885
TU469410 other upstream 359828 1017067 ~ 1020734 (+) True G408498
TU469422 other upstream 403463 976600 ~ 977099 (+) True G408510
TU469837 other downstream 252195 1633030 ~ 1634969 (+) True G408910
TU469855 other downstream 369065 1749900 ~ 1759036 (+) False G408928
TU469856 other downstream 369065 1749900 ~ 1759036 (+) True G408928
TU470056 other downstream 932574 2313409 ~ 2313894 (+) True CI01000300_02313596_02320912
TU471035 other downstream 1890850 3271685 ~ 3272398 (+) True G409984

Expression Profile