RNA id: TU469819


Basic Information

Item Value
RNA id TU469819
length 511
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G408894
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 1546837 ~ 1550388 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGCAAATGATGACAACATGCTTTATTTTTGGGTGAACTATTCCTTTAAGGGCTAGACTCTGTTTATGATAAAACTGTTATTGACATCATTGACAGGTCAAAGGACTCACATAGCTGCCAGTATGGTGACGGAACTCTAGGCCAAAGTACTCCTTCTCTAGCAGCTTTAGATGACCACACACCTTATTGAAGAAATCAGAACCCAGAATCTTTCTCTGCTCCACCTCGAAAACTCTCTCACTGTCGTCTAAGAAGATGACGCGTAATCGCAGTTTCTCATTCTTGTTCTTCTTCCGCGCAGCTGTCCTATTGACAGGTGTCTTCAGCAACTCGAACTTATCCCCCATCTTCTGCGCCTTTAGGGTTTAAACACCACACTTTTCATATAAATAAAGGTTGATAATGTGGGACATTATCCGTTTGATGCTGTTGTGAGGGAGTTGCGCGCGGCGGTCTCGTGACGACTGTTCACGCATCCTGTTTTTAAACTGAGCAGCATCAGCAGCACTAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU469818 lncRNA upstream 599 1545968 ~ 1546238 (+) True G408893
TU469817 lncRNA upstream 992 1545319 ~ 1545845 (+) True G408892
TU469816 lncRNA upstream 1565 1543907 ~ 1545272 (+) True G408891
TU469815 lncRNA upstream 3597 1542906 ~ 1543240 (+) True G408890
TU469812 lncRNA upstream 8546 1534310 ~ 1538291 (+) True G408887
TU469836 lncRNA downstream 82065 1632453 ~ 1632883 (+) True G408909
TU469870 lncRNA downstream 133879 1684267 ~ 1684594 (+) True G408942
TU469862 lncRNA downstream 175036 1725424 ~ 1730427 (+) True G408934
TU469857 lncRNA downstream 185110 1735498 ~ 1744773 (+) True G408929
TU469904 lncRNA downstream 236106 1786494 ~ 1786724 (+) True G408976
CI01000300_01527830_01531871.mRNA mRNA upstream 14818 1527830 ~ 1532019 (+) True CI01000300_01527830_01531871
CI01000300_01519715_01526925.mRNA mRNA upstream 19686 1519579 ~ 1527151 (+) True CI01000300_01519715_01526925
CI01000300_01513060_01515885.mRNA mRNA upstream 30952 1512905 ~ 1515885 (+) True CI01000300_01513060_01515885
CI01000300_01480400_01484276.mRNA mRNA upstream 62124 1479834 ~ 1484713 (+) True CI01000300_01480400_01484276
CI01000300_01426499_01431069.mRNA mRNA upstream 115573 1426053 ~ 1431264 (+) True CI01000300_01426499_01431069
CI01000300_01571005_01611574.mRNA mRNA downstream 19224 1569612 ~ 1611574 (+) True CI01000300_01571005_01611574
CI01000300_01753916_01754815.mRNA mRNA downstream 203528 1753916 ~ 1754980 (+) False CI01000300_01753916_01754815
CI01000300_01772239_01783579.mRNA mRNA downstream 221396 1771784 ~ 1783801 (+) True CI01000300_01772239_01783579
CI01000300_01801423_01807504.mRNA mRNA downstream 251035 1801423 ~ 1808125 (+) True CI01000300_01801423_01807504
CI01000300_01976057_01980856.mRNA mRNA downstream 425669 1976057 ~ 1981187 (+) True CI01000300_01976057_01980856
TU469410 other upstream 526103 1017067 ~ 1020734 (+) True G408498
TU469422 other upstream 569738 976600 ~ 977099 (+) True G408510
TU469837 other downstream 82642 1633030 ~ 1634969 (+) True G408910
TU469855 other downstream 199512 1749900 ~ 1759036 (+) False G408928
TU469856 other downstream 199512 1749900 ~ 1759036 (+) True G408928
TU470056 other downstream 763021 2313409 ~ 2313894 (+) True CI01000300_02313596_02320912
TU471035 other downstream 1721297 3271685 ~ 3272398 (+) True G409984

Expression Profile