RNA id: TU469870


Basic Information

Item Value
RNA id TU469870
length 308
lncRNA type intronic
GC content 0.33
exon number 2
gene id G408942
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 1684267 ~ 1684594 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAGTTCAGAGAGAAAGACGGAAAGGCATTTTCTCTATTGCTTTAGGTTTGGAACAACACATTCTAAATATTCCAAGGGTCTCCAGAATGCTATTGAGTGGACTTCTGCCAAACAATGAAGTTCATACATAAAGTTTCTCTCTTTACCCTAGTGTTTTCTAGATTTTTCAGCAGCTGCTAAAATTTTGGGCTAGTGAAGCAATTTTCTTATGTCATGCACTTCTTAATTTCATTGTAATGACAATAAAGGATATATATTCTATTCTATTCTATTCTATTCTATTCCGTTCTGTTCTATTCTATTCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU469836 lncRNA upstream 51384 1632453 ~ 1632883 (+) True G408909
TU469819 lncRNA upstream 133879 1546837 ~ 1550388 (+) True G408894
TU469818 lncRNA upstream 138029 1545968 ~ 1546238 (+) True G408893
TU469817 lncRNA upstream 138422 1545319 ~ 1545845 (+) True G408892
TU469816 lncRNA upstream 138995 1543907 ~ 1545272 (+) True G408891
TU469862 lncRNA downstream 40830 1725424 ~ 1730427 (+) True G408934
TU469857 lncRNA downstream 50904 1735498 ~ 1744773 (+) True G408929
TU469904 lncRNA downstream 101900 1786494 ~ 1786724 (+) True G408976
TU469935 lncRNA downstream 193692 1878286 ~ 1878873 (+) True G409006
TU469950 lncRNA downstream 245637 1930231 ~ 1959590 (+) True G409018
CI01000300_01571005_01611574.mRNA mRNA upstream 72693 1569612 ~ 1611574 (+) True CI01000300_01571005_01611574
CI01000300_01527830_01531871.mRNA mRNA upstream 152248 1527830 ~ 1532019 (+) True CI01000300_01527830_01531871
CI01000300_01519715_01526925.mRNA mRNA upstream 157116 1519579 ~ 1527151 (+) True CI01000300_01519715_01526925
CI01000300_01513060_01515885.mRNA mRNA upstream 168382 1512905 ~ 1515885 (+) True CI01000300_01513060_01515885
CI01000300_01480400_01484276.mRNA mRNA upstream 199554 1479834 ~ 1484713 (+) True CI01000300_01480400_01484276
CI01000300_01753916_01754815.mRNA mRNA downstream 69322 1753916 ~ 1754980 (+) False CI01000300_01753916_01754815
CI01000300_01772239_01783579.mRNA mRNA downstream 87190 1771784 ~ 1783801 (+) True CI01000300_01772239_01783579
CI01000300_01801423_01807504.mRNA mRNA downstream 116829 1801423 ~ 1808125 (+) True CI01000300_01801423_01807504
CI01000300_01976057_01980856.mRNA mRNA downstream 291463 1976057 ~ 1981187 (+) True CI01000300_01976057_01980856
CI01000300_02313596_02320912.mRNA mRNA downstream 627921 2312515 ~ 2321088 (+) False CI01000300_02313596_02320912
TU469837 other upstream 49298 1633030 ~ 1634969 (+) True G408910
TU469410 other upstream 663533 1017067 ~ 1020734 (+) True G408498
TU469422 other upstream 707168 976600 ~ 977099 (+) True G408510
TU469855 other downstream 65306 1749900 ~ 1759036 (+) False G408928
TU469856 other downstream 65306 1749900 ~ 1759036 (+) True G408928
TU470056 other downstream 628815 2313409 ~ 2313894 (+) True CI01000300_02313596_02320912
TU471035 other downstream 1587091 3271685 ~ 3272398 (+) True G409984
TU471334 other downstream 2216594 3901950 ~ 3902151 (+) True G410258

Expression Profile