RNA id: TU469857


Basic Information

Item Value
RNA id TU469857
length 513
lncRNA type read_through
GC content 0.43
exon number 2
gene id G408929
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 1735498 ~ 1744773 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAGGTGTTTACCTACCTTTAACAGTGAGGCACATGGTCTTTCGTATGGGTCCTGACGGATACACTTTGAAGGAACAAATGTAGCAAGCCTCATCTTCAAATGTTGTGTTTTTGATCTCAATAGATGTTGAATTAAATGACGCACGAGTCAAAGTGACTTTACTGGCATACTCCTTATCCACATTATCCTGGAAGCGTTCGCTGAATGTAGCCAGAATTTGTACAGACTGATCCGCGCGCACCCGCTGCCAGGTGACATGTTTGACTCCAGACGGGTTTGGCAGCGTACAAGAGAATGAAGCATCCTGACCCACCACAACATTTGTGTCTCCTTGTCCTACAATTTCTGAAAGGTAAGCTGGGGAATAAAAAAAAAAAATGATGTTGTTATAAGCCTCCCACCATCTCCATCCAGTTTAGAAACATCCAGCCAGAGCAGTTTCAGATTTAGCCATAAAAATTAGGAGTCAATTACCGACCTCTTCTGAGCAAACTTAATATGATCAGAAGGCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU469862 lncRNA upstream 5071 1725424 ~ 1730427 (+) True G408934
TU469870 lncRNA upstream 50904 1684267 ~ 1684594 (+) True G408942
TU469836 lncRNA upstream 102615 1632453 ~ 1632883 (+) True G408909
TU469819 lncRNA upstream 185110 1546837 ~ 1550388 (+) True G408894
TU469818 lncRNA upstream 189260 1545968 ~ 1546238 (+) True G408893
TU469904 lncRNA downstream 41721 1786494 ~ 1786724 (+) True G408976
TU469935 lncRNA downstream 133513 1878286 ~ 1878873 (+) True G409006
TU469950 lncRNA downstream 185458 1930231 ~ 1959590 (+) True G409018
TU469964 lncRNA downstream 218499 1963272 ~ 1964097 (+) True G409028
TU470061 lncRNA downstream 560296 2305069 ~ 2306889 (+) True G409117
CI01000300_01571005_01611574.mRNA mRNA upstream 123924 1569612 ~ 1611574 (+) True CI01000300_01571005_01611574
CI01000300_01527830_01531871.mRNA mRNA upstream 203479 1527830 ~ 1532019 (+) True CI01000300_01527830_01531871
CI01000300_01519715_01526925.mRNA mRNA upstream 208347 1519579 ~ 1527151 (+) True CI01000300_01519715_01526925
CI01000300_01513060_01515885.mRNA mRNA upstream 219613 1512905 ~ 1515885 (+) True CI01000300_01513060_01515885
CI01000300_01480400_01484276.mRNA mRNA upstream 250785 1479834 ~ 1484713 (+) True CI01000300_01480400_01484276
CI01000300_01753916_01754815.mRNA mRNA downstream 9143 1753916 ~ 1754980 (+) False CI01000300_01753916_01754815
CI01000300_01772239_01783579.mRNA mRNA downstream 27011 1771784 ~ 1783801 (+) True CI01000300_01772239_01783579
CI01000300_01801423_01807504.mRNA mRNA downstream 56650 1801423 ~ 1808125 (+) True CI01000300_01801423_01807504
CI01000300_01976057_01980856.mRNA mRNA downstream 231284 1976057 ~ 1981187 (+) True CI01000300_01976057_01980856
CI01000300_02313596_02320912.mRNA mRNA downstream 567742 2312515 ~ 2321088 (+) False CI01000300_02313596_02320912
TU469837 other upstream 100529 1633030 ~ 1634969 (+) True G408910
TU469410 other upstream 714764 1017067 ~ 1020734 (+) True G408498
TU469422 other upstream 758399 976600 ~ 977099 (+) True G408510
TU469855 other downstream 5127 1749900 ~ 1759036 (+) False G408928
TU469856 other downstream 5127 1749900 ~ 1759036 (+) True G408928
TU470056 other downstream 568636 2313409 ~ 2313894 (+) True CI01000300_02313596_02320912
TU471035 other downstream 1526912 3271685 ~ 3272398 (+) True G409984
TU471334 other downstream 2156415 3901950 ~ 3902151 (+) True G410258

Expression Profile