RNA id: TCONS_00019535


Basic Information

Item Value
RNA id TCONS_00019535
length 693
RNA type nonsense_mediated_decay
GC content 0.46
exon number 6
gene id XLOC_009767
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 13424534 ~ 13453818 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGGAGGGAGGCTCTTATCTCCGCACCGTCACATTAAAACCATAAATTAAAAACAGAGCGGAAGAGCCGCCCGCGTGCGTGCATGATTCAGAGAGCCAGGaaagaaacaataaaataaacacggCGGATACACATTGGCAGAGTTTACAGGAGCAGCTCTGACATCAGTCAAGTGAGAGGAGGAAGAGGGGTGCAACATTGCTTCACGGAAACCGCTTAACAGTTTCACTCGCTGACACAGTTAGAAAGTAGGAAACAGAGAAACGGAAACAAAAAGGATCCAACTAATTTCCTTTTAAAGCAAACTATGTTGGTCAAAGAGTACCGGATATGCATGCCGCTCACTGTGGATGAGTACAGGATCGGCCAGTTGTACATGATCAGCAAGCACAGCAATGAGCAGAGCGGAGGTGGTGAAGGGGTGGAGGTCGTCCGTAATGAACCCTGCACAGACCCCAAACATGGATCTGCAAACTGCCAACTTGGATGAGGAGGTTTGTTCCCATggttttttatttaacagaaactGCCTGGAACTTCTACCCATACACCATAACAGaGTATACGTGTTCTTTCCTACCGAGGTTCCATGTCAAGATTGAGACGCACTTTAAGAATGACAACGGCTGCAGCAAAAATGTGTTCGGCGATGACCCCACTCCAATGGACAACGTCTGCTTTTTGGATATTTT

Function

GO:

id name namespace
GO:0015914 phospholipid transport biological_process
GO:0005737 cytoplasm cellular_component
GO:0005548 phospholipid transporter activity molecular_function
GO:0008526 phosphatidylinositol transfer activity molecular_function
GO:0035091 phosphatidylinositol binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-158 Predicted to enable phosphatidylinositol binding activity and phosphatidylinositol transfer activity. Predicted to act upstream of or within phospholipid transport. Predicted to be active in cytoplasm. Is expressed in several structures, including EVL; epidermis; periderm; pronephric duct; and sensory system. Orthologous to human PITPNC1 (phosphatidylinositol transfer protein cytoplasmic 1).

Ensembl:

ensembl_id ENSDART00000146010

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021900 lncRNA upstream 251853 13168872 ~ 13172698 (+) True XLOC_009766
TCONS_00021688 lncRNA upstream 308942 13112264 ~ 13115609 (+) True XLOC_009765
TCONS_00021899 lncRNA upstream 460674 12962960 ~ 12963877 (+) True XLOC_009764
TCONS_00019529 lncRNA upstream 675633 12747218 ~ 12748918 (+) True XLOC_009761
TCONS_00019528 lncRNA upstream 680267 12740912 ~ 12744284 (+) False XLOC_009761
TCONS_00021689 lncRNA downstream 57766 13499361 ~ 13501965 (+) True XLOC_009768
TCONS_00021901 lncRNA downstream 171059 13612654 ~ 13614188 (+) True XLOC_009769
TCONS_00019546 lncRNA downstream 414137 13855732 ~ 13856566 (+) False XLOC_009772
TCONS_00019547 lncRNA downstream 415979 13857574 ~ 13858829 (+) True XLOC_009772
TCONS_00021902 lncRNA downstream 500478 13942073 ~ 13945576 (+) True XLOC_009776
TCONS_00019532 mRNA upstream 558000 12836143 ~ 12866551 (+) True XLOC_009763
TCONS_00019531 mRNA upstream 602783 12812472 ~ 12821768 (+) True XLOC_009762
TCONS_00019530 mRNA upstream 603741 12812214 ~ 12820810 (+) False XLOC_009762
TCONS_00019526 mRNA upstream 668023 12730338 ~ 12756528 (+) False XLOC_009761
TCONS_00019537 mRNA downstream 242212 13683807 ~ 13706403 (+) False XLOC_009770
TCONS_00019538 mRNA downstream 244055 13685650 ~ 13706447 (+) False XLOC_009770
TCONS_00019539 mRNA downstream 244276 13685871 ~ 13706766 (+) False XLOC_009770
TCONS_00019540 mRNA downstream 244276 13685871 ~ 13706770 (+) True XLOC_009770
TCONS_00019541 mRNA downstream 376905 13818500 ~ 13825976 (+) False XLOC_009771
TCONS_00019518 other upstream 1043705 12380730 ~ 12380846 (+) True XLOC_009756
TCONS_00019517 other upstream 1124265 12300169 ~ 12300286 (+) True XLOC_009755
TCONS_00019511 other upstream 1178655 12241490 ~ 12245896 (+) False XLOC_009752
TCONS_00019500 other upstream 1721214 11700646 ~ 11703337 (+) False XLOC_009744
TCONS_00019483 other upstream 2133668 11242560 ~ 11290883 (+) False XLOC_009731
TCONS_00019585 other downstream 2424629 15866224 ~ 15867165 (+) True XLOC_009800
TCONS_00019587 other downstream 2712729 16154324 ~ 16154458 (+) True XLOC_009803
TCONS_00019609 other downstream 4075353 17516948 ~ 17517082 (+) True XLOC_009816
TCONS_00019610 other downstream 4129215 17570810 ~ 17570934 (+) True XLOC_009818
TCONS_00019630 other downstream 5623750 19065345 ~ 19128471 (+) False XLOC_009830

Expression Profile

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