RNA id: TU469964


Basic Information

Item Value
RNA id TU469964
length 296
lncRNA type antisense_over
GC content 0.34
exon number 2
gene id G409028
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 1963272 ~ 1964097 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTGGCTACATTTTTAATAATTATTTTTTGATTATACAAACATCAATATATACAAACATTTAAAGACTGAAAGGAAAAGAGTAAACAACAAGGCTTCCTAGCACAGGAGATCATCGTGGATTTTCTTGAGGACTTTTGTCAGATAGTTCTTGGCTGGTTTGATTGATGATAGGATGTCTTCAATTTGACTCAACCTTGTTTTCCCCATGTGTTTTTTGAAGTCCTGTATGTGAAGTGGTCCAAAGGGATAGTCTGGAGTGACTATCAGATTTAACTCAAACTTTTCAAATGCTTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU469950 lncRNA upstream 3682 1930231 ~ 1959590 (+) True G409018
TU469935 lncRNA upstream 84399 1878286 ~ 1878873 (+) True G409006
TU469904 lncRNA upstream 176548 1786494 ~ 1786724 (+) True G408976
TU469857 lncRNA upstream 218499 1735498 ~ 1744773 (+) True G408929
TU469862 lncRNA upstream 232845 1725424 ~ 1730427 (+) True G408934
TU470061 lncRNA downstream 340972 2305069 ~ 2306889 (+) True G409117
TU470085 lncRNA downstream 373466 2337563 ~ 2337787 (+) True G409141
TU470058 lncRNA downstream 406273 2370370 ~ 2370635 (+) True CI01000300_02356651_02369301
TU470099 lncRNA downstream 442414 2406511 ~ 2406856 (+) True G409155
TU470143 lncRNA downstream 496993 2461090 ~ 2461979 (+) True G409174
CI01000300_01801423_01807504.mRNA mRNA upstream 155147 1801423 ~ 1808125 (+) True CI01000300_01801423_01807504
CI01000300_01772239_01783579.mRNA mRNA upstream 179471 1771784 ~ 1783801 (+) True CI01000300_01772239_01783579
CI01000300_01753916_01754815.mRNA mRNA upstream 208292 1753916 ~ 1754980 (+) False CI01000300_01753916_01754815
CI01000300_01571005_01611574.mRNA mRNA upstream 351698 1569612 ~ 1611574 (+) True CI01000300_01571005_01611574
CI01000300_01527830_01531871.mRNA mRNA upstream 431253 1527830 ~ 1532019 (+) True CI01000300_01527830_01531871
CI01000300_01976057_01980856.mRNA mRNA downstream 11960 1976057 ~ 1981187 (+) True CI01000300_01976057_01980856
CI01000300_02313596_02320912.mRNA mRNA downstream 348418 2312515 ~ 2321088 (+) False CI01000300_02313596_02320912
CI01000300_02340225_02344792.mRNA mRNA downstream 374691 2338788 ~ 2344976 (+) True CI01000300_02340225_02344792
CI01000300_02356651_02369301.mRNA mRNA downstream 392299 2356396 ~ 2370981 (+) False CI01000300_02356651_02369301
CI01000300_02372157_02389226.mRNA mRNA downstream 407670 2371767 ~ 2389411 (+) True CI01000300_02372157_02389226
TU469855 other upstream 204236 1749900 ~ 1759036 (+) False G408928
TU469856 other upstream 204236 1749900 ~ 1759036 (+) True G408928
TU469837 other upstream 328303 1633030 ~ 1634969 (+) True G408910
TU469410 other upstream 942538 1017067 ~ 1020734 (+) True G408498
TU469422 other upstream 986173 976600 ~ 977099 (+) True G408510
TU470056 other downstream 349312 2313409 ~ 2313894 (+) True CI01000300_02313596_02320912
TU471035 other downstream 1307588 3271685 ~ 3272398 (+) True G409984
TU471334 other downstream 1937091 3901950 ~ 3902151 (+) True G410258
TU471472 other downstream 2159601 4123698 ~ 4124416 (+) True G410382
TU471478 other downstream 2231549 4195646 ~ 4196555 (+) True G410388

Expression Profile