RNA id: TU470218


Basic Information

Item Value
RNA id TU470218
length 215
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G409246
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 2585699 ~ 2585913 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCAGTCCCTTTGCCAGACTGGCGACAAGAGCTTCAGAAAAATAAATGCCAAAAATGTCAACATGATATGTAGCCTCAAGCTTTGCAAGCAGTCCATCAACAACACTCTGTAGAAGATGGTATGGCAAAGTTAAACCTTGAGAGGCTTCTTCTTCTGTTCCTCGCTGGCTGCTTCTTTCAAATGGAGCTTCATCATGTACATCCTCAATCTCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU470141 lncRNA upstream 80198 2493449 ~ 2505501 (+) True G409172
TU470174 lncRNA upstream 120588 2464479 ~ 2465111 (+) True G409205
TU470143 lncRNA upstream 123720 2461090 ~ 2461979 (+) True G409174
TU470099 lncRNA upstream 178843 2406511 ~ 2406856 (+) True G409155
TU470058 lncRNA upstream 215064 2370370 ~ 2370635 (+) True CI01000300_02356651_02369301
TU470223 lncRNA downstream 15828 2601741 ~ 2601964 (+) True G409251
TU470129 lncRNA downstream 35125 2621038 ~ 2630438 (+) True G409163
TU470224 lncRNA downstream 50999 2636912 ~ 2637668 (+) True CI01000300_02636916_02637474
TU470157 lncRNA downstream 53609 2639522 ~ 2639910 (+) True G409188
TU470246 lncRNA downstream 124760 2710673 ~ 2710889 (+) True G409273
CI01000300_02573883_02577623.mRNA mRNA upstream 8076 2572591 ~ 2577623 (+) True CI01000300_02573883_02577623
CI01000300_02553990_02570561.mRNA mRNA upstream 14766 2553473 ~ 2570933 (+) True CI01000300_02553990_02570561
CI01000300_02529181_02537776.mRNA mRNA upstream 47923 2529181 ~ 2537776 (+) True CI01000300_02529181_02537776
CI01000300_02481007_02486342.mRNA mRNA upstream 98632 2478874 ~ 2487067 (+) True CI01000300_02481007_02486342
CI01000300_02477372_02477542.mRNA mRNA upstream 108150 2477311 ~ 2477549 (+) True CI01000300_02477372_02477542
CI01000300_02591604_02607183.mRNA mRNA downstream 5691 2591604 ~ 2607183 (+) True CI01000300_02591604_02607183
CI01000300_02636916_02637474.mRNA mRNA downstream 50960 2636873 ~ 2637644 (+) False CI01000300_02636916_02637474
CI01000300_02658543_02666317.mRNA mRNA downstream 72630 2658543 ~ 2666738 (+) True CI01000300_02658543_02666317
CI01000300_02668633_02682257.mRNA mRNA downstream 82720 2668633 ~ 2682738 (+) True CI01000300_02668633_02682257
CI01000300_02686699_02695556.mRNA mRNA downstream 100786 2686699 ~ 2696028 (+) True CI01000300_02686699_02695556
TU470056 other upstream 271805 2313409 ~ 2313894 (+) True CI01000300_02313596_02320912
TU469855 other upstream 826663 1749900 ~ 1759036 (+) False G408928
TU469856 other upstream 826663 1749900 ~ 1759036 (+) True G408928
TU469837 other upstream 950730 1633030 ~ 1634969 (+) True G408910
TU469410 other upstream 1564965 1017067 ~ 1020734 (+) True G408498
TU471035 other downstream 685772 3271685 ~ 3272398 (+) True G409984
TU471334 other downstream 1315275 3901950 ~ 3902151 (+) True G410258
TU471472 other downstream 1537785 4123698 ~ 4124416 (+) True G410382
TU471478 other downstream 1609733 4195646 ~ 4196555 (+) True G410388
TU472695 other downstream 3305154 5891067 ~ 5892425 (+) True CI01000300_05891147_05892754

Expression Profile