RNA id: TU470266


Basic Information

Item Value
RNA id TU470266
length 209
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G409292
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 2792314 ~ 2792522 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAGGATGGATGCTTACTTAGAAGGCATCTGGCTTTGTAGGCACTATACAGTGAGGCTGCTTAGCAGAATGATCTAATGTATGGTAAAAATGTAAACCTCTCAATGACAGTATTCAGGCCATATGTGTCAAATATCAGTTACTTAATATTAACATCTTGCTTTGCTCACAGTTGGTTGAAAACATTCTGAAGTAACATGCAGGTTCAAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU470258 lncRNA upstream 15955 2776147 ~ 2776359 (+) True G409284
TU470246 lncRNA upstream 81425 2710673 ~ 2710889 (+) True G409273
TU470157 lncRNA upstream 152404 2639522 ~ 2639910 (+) True G409188
TU470224 lncRNA upstream 154646 2636912 ~ 2637668 (+) True CI01000300_02636916_02637474
TU470129 lncRNA upstream 161876 2621038 ~ 2630438 (+) True G409163
TU470268 lncRNA downstream 8767 2801289 ~ 2801570 (+) True G409294
TU470269 lncRNA downstream 28003 2820525 ~ 2820766 (+) True G409295
TU470275 lncRNA downstream 45666 2838188 ~ 2838672 (+) True G409301
TU470276 lncRNA downstream 55071 2847593 ~ 2847932 (+) True G409302
TU470280 lncRNA downstream 70524 2863046 ~ 2863624 (+) True G409306
CI01000300_02772428_02774786.mRNA mRNA upstream 17340 2772307 ~ 2774974 (+) True CI01000300_02772428_02774786
CI01000300_02744370_02753382.mRNA mRNA upstream 38361 2744370 ~ 2753953 (+) True CI01000300_02744370_02753382
CI01000300_02738497_02743503.mRNA mRNA upstream 48771 2738497 ~ 2743543 (+) True CI01000300_02738497_02743503
CI01000300_02723637_02737142.mRNA mRNA upstream 54423 2723637 ~ 2737891 (+) True CI01000300_02723637_02737142
CI01000300_02686699_02695556.mRNA mRNA upstream 96286 2686699 ~ 2696028 (+) True CI01000300_02686699_02695556
CI01000300_02990347_03008777.mRNA mRNA downstream 197176 2989698 ~ 3008864 (+) True CI01000300_02990347_03008777
CI01000300_03694786_03699730.mRNA mRNA downstream 902264 3694786 ~ 3699973 (+) True CI01000300_03694786_03699730
CI01000300_03744731_03749017.mRNA mRNA downstream 951888 3744410 ~ 3749023 (+) True CI01000300_03744731_03749017
CI01000300_03752633_03755353.mRNA mRNA downstream 960111 3752633 ~ 3756860 (+) True CI01000300_03752633_03755353
CI01000300_03769789_03773233.mRNA mRNA downstream 975677 3768199 ~ 3773262 (+) True CI01000300_03769789_03773233
TU470056 other upstream 478420 2313409 ~ 2313894 (+) True CI01000300_02313596_02320912
TU469855 other upstream 1033278 1749900 ~ 1759036 (+) False G408928
TU469856 other upstream 1033278 1749900 ~ 1759036 (+) True G408928
TU469837 other upstream 1157345 1633030 ~ 1634969 (+) True G408910
TU469410 other upstream 1771580 1017067 ~ 1020734 (+) True G408498
TU471035 other downstream 479163 3271685 ~ 3272398 (+) True G409984
TU471334 other downstream 1108666 3901950 ~ 3902151 (+) True G410258
TU471472 other downstream 1331176 4123698 ~ 4124416 (+) True G410382
TU471478 other downstream 1403124 4195646 ~ 4196555 (+) True G410388
TU472695 other downstream 3098545 5891067 ~ 5892425 (+) True CI01000300_05891147_05892754

Expression Profile