Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00019538 |
| length | 1042 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 5 |
| gene id | XLOC_009770 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 13683807 ~ 13706770 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0021551 | central nervous system morphogenesis | biological_process |
| GO:0016579 | protein deubiquitination | biological_process |
| GO:1904888 | cranial skeletal system development | biological_process |
| GO:0005575 | cellular_component | cellular_component |
| GO:0004843 | thiol-dependent ubiquitin-specific protease activity | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-850 | Predicted to enable thiol-dependent deubiquitinase. Acts upstream of or within central nervous system morphogenesis and cranial skeletal system development. Orthologous to human JOSD2 (Josephin domain containing 2). |
| ensembl_id | ENSDART00000142428 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00021901 | lncRNA | upstream | 71462 | 13612654 ~ 13614188 (+) | True | XLOC_009769 |
| TCONS_00021689 | lncRNA | upstream | 183685 | 13499361 ~ 13501965 (+) | True | XLOC_009768 |
| TCONS_00021900 | lncRNA | upstream | 512952 | 13168872 ~ 13172698 (+) | True | XLOC_009766 |
| TCONS_00021688 | lncRNA | upstream | 570041 | 13112264 ~ 13115609 (+) | True | XLOC_009765 |
| TCONS_00021899 | lncRNA | upstream | 721773 | 12962960 ~ 12963877 (+) | True | XLOC_009764 |
| TCONS_00019546 | lncRNA | downstream | 149285 | 13855732 ~ 13856566 (+) | False | XLOC_009772 |
| TCONS_00019547 | lncRNA | downstream | 151127 | 13857574 ~ 13858829 (+) | True | XLOC_009772 |
| TCONS_00021902 | lncRNA | downstream | 235626 | 13942073 ~ 13945576 (+) | True | XLOC_009776 |
| TCONS_00021690 | lncRNA | downstream | 243570 | 13950017 ~ 13954147 (+) | True | XLOC_009777 |
| TCONS_00019559 | lncRNA | downstream | 303725 | 14010172 ~ 14011596 (+) | False | XLOC_009779 |
| TCONS_00019533 | mRNA | upstream | 231832 | 13424534 ~ 13453818 (+) | False | XLOC_009767 |
| TCONS_00019536 | mRNA | upstream | 232683 | 13427967 ~ 13452967 (+) | True | XLOC_009767 |
| TCONS_00019532 | mRNA | upstream | 819099 | 12836143 ~ 12866551 (+) | True | XLOC_009763 |
| TCONS_00019531 | mRNA | upstream | 863882 | 12812472 ~ 12821768 (+) | True | XLOC_009762 |
| TCONS_00019530 | mRNA | upstream | 864840 | 12812214 ~ 12820810 (+) | False | XLOC_009762 |
| TCONS_00019541 | mRNA | downstream | 112053 | 13818500 ~ 13825976 (+) | False | XLOC_009771 |
| TCONS_00019542 | mRNA | downstream | 112296 | 13818743 ~ 13845997 (+) | False | XLOC_009771 |
| TCONS_00019543 | mRNA | downstream | 115690 | 13822137 ~ 13847335 (+) | True | XLOC_009771 |
| TCONS_00019544 | mRNA | downstream | 148592 | 13855039 ~ 13859164 (+) | False | XLOC_009772 |
| TCONS_00019545 | mRNA | downstream | 148646 | 13855093 ~ 13855847 (+) | False | XLOC_009772 |
| TCONS_00019534 | other | upstream | 244017 | 13424548 ~ 13441633 (+) | False | XLOC_009767 |
| TCONS_00019535 | other | upstream | 244055 | 13424551 ~ 13441595 (+) | False | XLOC_009767 |
| TCONS_00019518 | other | upstream | 1304804 | 12380730 ~ 12380846 (+) | True | XLOC_009756 |
| TCONS_00019517 | other | upstream | 1385364 | 12300169 ~ 12300286 (+) | True | XLOC_009755 |
| TCONS_00019511 | other | upstream | 1439754 | 12241490 ~ 12245896 (+) | False | XLOC_009752 |
| TCONS_00019585 | other | downstream | 2159777 | 15866224 ~ 15867165 (+) | True | XLOC_009800 |
| TCONS_00019587 | other | downstream | 2447877 | 16154324 ~ 16154458 (+) | True | XLOC_009803 |
| TCONS_00019609 | other | downstream | 3810501 | 17516948 ~ 17517082 (+) | True | XLOC_009816 |
| TCONS_00019610 | other | downstream | 3864363 | 17570810 ~ 17570934 (+) | True | XLOC_009818 |
| TCONS_00019630 | other | downstream | 5358898 | 19065345 ~ 19128471 (+) | False | XLOC_009830 |
