RNA id: TU471035


Basic Information

Item Value
RNA id TU471035
length 278
RNA type TUCP
GC content 0.47
exon number 2
gene id G409984
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 3271685 ~ 3272398 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATGCTTTCTGCTGCTGACCAACTTTATGGAGATGCAGATTTCATTTTCCAACAGGACTTGGCACCTGCACACAGTGCCAAAGCTACCAGTACCTGGTTTAAGGACCATGGTATCCCTGTTCTTAATTGGCCAGCAAACTCACCTGACCTTAACCCCATAGAAAATCTATGGGGTATTGTGAAGAGGAAGATGCGATATGCCAGACCCAACAATGCAGAAGAGCTGAAGGCCACTATCAGAGCAACCTGGGCTCTTATAACACCTGAGCAGTGCCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU471019 lncRNA upstream 86957 3184510 ~ 3184728 (+) True G409970
TU470334 lncRNA upstream 195171 3076303 ~ 3076514 (+) True G409357
TU470313 lncRNA upstream 253413 3016907 ~ 3018272 (+) True G409336
TU470308 lncRNA upstream 296003 2975426 ~ 2975682 (+) True G409334
TU470303 lncRNA upstream 304323 2967147 ~ 2967362 (+) True G409329
TU471221 lncRNA downstream 128182 3400580 ~ 3400787 (+) True G410148
TU471245 lncRNA downstream 163295 3435693 ~ 3435892 (+) True G410172
TU471313 lncRNA downstream 279120 3551518 ~ 3551735 (+) True G410238
TU471315 lncRNA downstream 280431 3552829 ~ 3553035 (+) True G410240
TU471317 lncRNA downstream 281352 3553750 ~ 3553986 (+) True G410242
CI01000300_02990347_03008777.mRNA mRNA upstream 262821 2989698 ~ 3008864 (+) True CI01000300_02990347_03008777
CI01000300_02772428_02774786.mRNA mRNA upstream 496711 2772307 ~ 2774974 (+) True CI01000300_02772428_02774786
CI01000300_02744370_02753382.mRNA mRNA upstream 517732 2744370 ~ 2753953 (+) True CI01000300_02744370_02753382
CI01000300_02738497_02743503.mRNA mRNA upstream 528142 2738497 ~ 2743543 (+) True CI01000300_02738497_02743503
CI01000300_02723637_02737142.mRNA mRNA upstream 533794 2723637 ~ 2737891 (+) True CI01000300_02723637_02737142
CI01000300_03694786_03699730.mRNA mRNA downstream 422388 3694786 ~ 3699973 (+) True CI01000300_03694786_03699730
CI01000300_03744731_03749017.mRNA mRNA downstream 472012 3744410 ~ 3749023 (+) True CI01000300_03744731_03749017
CI01000300_03752633_03755353.mRNA mRNA downstream 480235 3752633 ~ 3756860 (+) True CI01000300_03752633_03755353
CI01000300_03769789_03773233.mRNA mRNA downstream 495801 3768199 ~ 3773262 (+) True CI01000300_03769789_03773233
CI01000300_03773519_03831065.mRNA mRNA downstream 500964 3773362 ~ 3831422 (+) True CI01000300_03773519_03831065
TU470056 other upstream 957791 2313409 ~ 2313894 (+) True CI01000300_02313596_02320912
TU469855 other upstream 1512649 1749900 ~ 1759036 (+) False G408928
TU469856 other upstream 1512649 1749900 ~ 1759036 (+) True G408928
TU469837 other upstream 1636716 1633030 ~ 1634969 (+) True G408910
TU469410 other upstream 2250951 1017067 ~ 1020734 (+) True G408498
TU471334 other downstream 628790 3901950 ~ 3902151 (+) True G410258
TU471472 other downstream 851300 4123698 ~ 4124416 (+) True G410382
TU471478 other downstream 923248 4195646 ~ 4196555 (+) True G410388
TU472695 other downstream 2618669 5891067 ~ 5892425 (+) True CI01000300_05891147_05892754
TU473010 other downstream 3196847 6469245 ~ 6469705 (+) False G411777

Expression Profile