RNA id: TU471328


Basic Information

Item Value
RNA id TU471328
length 235
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G410253
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 3583880 ~ 3584114 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGGGGCTCTTACAGACGAGCCGTGGCTGTTAGTTTCAAAGGTAATTTACTAATTTTCGTTGCGGATGCCACAATATTGGTTTTTATATCCGGACTATAAACTTTTAGTCAAAAATTTCGTATGTTTGCAACAAAGGAATAGCAATACTGTCAGCTGAAAACACTGTTTCAGAGATATAGCTTACATGAGCGCTGCACTCTCTGGATCAGCGGCAGCGCGGAAGCAGGTTTAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU471317 lncRNA upstream 29894 3553750 ~ 3553986 (+) True G410242
TU471315 lncRNA upstream 30845 3552829 ~ 3553035 (+) True G410240
TU471313 lncRNA upstream 32145 3551518 ~ 3551735 (+) True G410238
TU471245 lncRNA upstream 147988 3435693 ~ 3435892 (+) True G410172
TU471221 lncRNA upstream 183093 3400580 ~ 3400787 (+) True G410148
TU471341 lncRNA downstream 123353 3707467 ~ 3718742 (+) True G410263
TU471413 lncRNA downstream 291778 3875892 ~ 3876102 (+) True G410334
TU471414 lncRNA downstream 292571 3876685 ~ 3877036 (+) True G410335
TU471427 lncRNA downstream 327260 3911374 ~ 3913993 (+) True G410345
TU471399 lncRNA downstream 332647 3916761 ~ 3938947 (+) True G410320
CI01000300_02990347_03008777.mRNA mRNA upstream 575016 2989698 ~ 3008864 (+) True CI01000300_02990347_03008777
CI01000300_02772428_02774786.mRNA mRNA upstream 808906 2772307 ~ 2774974 (+) True CI01000300_02772428_02774786
CI01000300_02744370_02753382.mRNA mRNA upstream 829927 2744370 ~ 2753953 (+) True CI01000300_02744370_02753382
CI01000300_02738497_02743503.mRNA mRNA upstream 840337 2738497 ~ 2743543 (+) True CI01000300_02738497_02743503
CI01000300_02723637_02737142.mRNA mRNA upstream 845989 2723637 ~ 2737891 (+) True CI01000300_02723637_02737142
CI01000300_03694786_03699730.mRNA mRNA downstream 110672 3694786 ~ 3699973 (+) True CI01000300_03694786_03699730
CI01000300_03744731_03749017.mRNA mRNA downstream 160296 3744410 ~ 3749023 (+) True CI01000300_03744731_03749017
CI01000300_03752633_03755353.mRNA mRNA downstream 168519 3752633 ~ 3756860 (+) True CI01000300_03752633_03755353
CI01000300_03769789_03773233.mRNA mRNA downstream 184085 3768199 ~ 3773262 (+) True CI01000300_03769789_03773233
CI01000300_03773519_03831065.mRNA mRNA downstream 189248 3773362 ~ 3831422 (+) True CI01000300_03773519_03831065
TU471035 other upstream 311482 3271685 ~ 3272398 (+) True G409984
TU470056 other upstream 1269986 2313409 ~ 2313894 (+) True CI01000300_02313596_02320912
TU469855 other upstream 1824844 1749900 ~ 1759036 (+) False G408928
TU469856 other upstream 1824844 1749900 ~ 1759036 (+) True G408928
TU469837 other upstream 1948911 1633030 ~ 1634969 (+) True G408910
TU471334 other downstream 317074 3901950 ~ 3902151 (+) True G410258
TU471472 other downstream 539584 4123698 ~ 4124416 (+) True G410382
TU471478 other downstream 611532 4195646 ~ 4196555 (+) True G410388
TU472695 other downstream 2306953 5891067 ~ 5892425 (+) True CI01000300_05891147_05892754
TU473010 other downstream 2885131 6469245 ~ 6469705 (+) False G411777

Expression Profile