RNA id: TU471414


Basic Information

Item Value
RNA id TU471414
length 352
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G410335
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 3876685 ~ 3877036 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTCCATGATTTTGTACATGTATTTGACTGCATCTATAATATTTATGTCCCTGTAAATCATTTCTTTTAAGTGGACTTAAATAAATTGTTAAAATGTATGTGTACACAACTGCTGATGGGGTCTCTTTTCATTTTTTGTATGCTTCAAAGACCCTTATGATGATGGTTTGTGTCAATATGCATTGTGATTATGATCCATGTTGGCTTTTTCTTTTTTTTCTTTTTTTGCATGTTTTGTGTAAGTGTATGCTGTTACAATATATTCTACTACTTTGTAACATTGCAGGTCAGTTTCATCTAGTCTTGTAAAATATAGACTATCGTCTGTTGGGCAAAGAAAAAAAAAATTAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU471413 lncRNA upstream 583 3875892 ~ 3876102 (+) True G410334
TU471341 lncRNA upstream 157943 3707467 ~ 3718742 (+) True G410263
TU471328 lncRNA upstream 292571 3583880 ~ 3584114 (+) True G410253
TU471317 lncRNA upstream 322699 3553750 ~ 3553986 (+) True G410242
TU471315 lncRNA upstream 323650 3552829 ~ 3553035 (+) True G410240
TU471427 lncRNA downstream 34338 3911374 ~ 3913993 (+) True G410345
TU471399 lncRNA downstream 39725 3916761 ~ 3938947 (+) True G410320
TU471402 lncRNA downstream 62001 3939037 ~ 3939682 (+) True G410323
TU471435 lncRNA downstream 75794 3952830 ~ 3953045 (+) True G410353
TU471436 lncRNA downstream 76140 3953176 ~ 3953414 (+) True G410354
CI01000300_03773519_03831065.mRNA mRNA upstream 45263 3773362 ~ 3831422 (+) True CI01000300_03773519_03831065
CI01000300_03769789_03773233.mRNA mRNA upstream 103423 3768199 ~ 3773262 (+) True CI01000300_03769789_03773233
CI01000300_03752633_03755353.mRNA mRNA upstream 119825 3752633 ~ 3756860 (+) True CI01000300_03752633_03755353
CI01000300_03744731_03749017.mRNA mRNA upstream 127662 3744410 ~ 3749023 (+) True CI01000300_03744731_03749017
CI01000300_03694786_03699730.mRNA mRNA upstream 176712 3694786 ~ 3699973 (+) True CI01000300_03694786_03699730
CI01000300_03901275_03902800.mRNA mRNA downstream 24112 3901148 ~ 3902892 (+) False CI01000300_03901275_03902800
CI01000300_03924558_03934407.mRNA mRNA downstream 47522 3924558 ~ 3935360 (+) True CI01000300_03924558_03934407
CI01000300_03954605_03969070.mRNA mRNA downstream 77569 3954605 ~ 3970439 (+) True CI01000300_03954605_03969070
CI01000300_03972562_03976190.mRNA mRNA downstream 95526 3972562 ~ 3976225 (+) True CI01000300_03972562_03976190
CI01000300_03981015_03991839.mRNA mRNA downstream 103979 3981015 ~ 3992010 (+) True CI01000300_03981015_03991839
TU471035 other upstream 604287 3271685 ~ 3272398 (+) True G409984
TU470056 other upstream 1562791 2313409 ~ 2313894 (+) True CI01000300_02313596_02320912
TU469855 other upstream 2117649 1749900 ~ 1759036 (+) False G408928
TU469856 other upstream 2117649 1749900 ~ 1759036 (+) True G408928
TU469837 other upstream 2241716 1633030 ~ 1634969 (+) True G408910
TU471334 other downstream 24152 3901950 ~ 3902151 (+) True G410258
TU471472 other downstream 246662 4123698 ~ 4124416 (+) True G410382
TU471478 other downstream 318610 4195646 ~ 4196555 (+) True G410388
TU472695 other downstream 2014031 5891067 ~ 5892425 (+) True CI01000300_05891147_05892754
TU473010 other downstream 2592209 6469245 ~ 6469705 (+) False G411777

Expression Profile