RNA id: TU471427


Basic Information

Item Value
RNA id TU471427
length 311
lncRNA type antisense_over
GC content 0.50
exon number 4
gene id G410345
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 3911374 ~ 3913993 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTGCTTTTGTCACTGGCAGGATGATGGCAGCCATTTTGCTGAGCATGTCATCCACGGAGGAGTAGTCATGTGACACCAGCTGGGCCAACTCCACCAGTACCTGGTTGCGTTTGCTCTCTTGTTCAGAACTCTCACACAGCTGACTGTTTTCCAGGATCAGTCCGAACAACACCATGTGTGACGACAGCACTTTCTCATCTTGCTCAGAGAAACAGCTGCCCGGCCTGTTTTTGTTCACAGCCATGATGACACCTATAACCTCCTTTTTGTGGTTCAGGATGGGTACACTGAGAATACTCTTGGGTCTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU471414 lncRNA upstream 34338 3876685 ~ 3877036 (+) True G410335
TU471413 lncRNA upstream 35272 3875892 ~ 3876102 (+) True G410334
TU471341 lncRNA upstream 192632 3707467 ~ 3718742 (+) True G410263
TU471328 lncRNA upstream 327260 3583880 ~ 3584114 (+) True G410253
TU471317 lncRNA upstream 357388 3553750 ~ 3553986 (+) True G410242
TU471399 lncRNA downstream 2768 3916761 ~ 3938947 (+) True G410320
TU471402 lncRNA downstream 25044 3939037 ~ 3939682 (+) True G410323
TU471435 lncRNA downstream 38837 3952830 ~ 3953045 (+) True G410353
TU471436 lncRNA downstream 39183 3953176 ~ 3953414 (+) True G410354
TU471441 lncRNA downstream 65051 3979044 ~ 3979269 (+) True G410359
CI01000300_03901275_03902800.mRNA mRNA upstream 8482 3901148 ~ 3902892 (+) False CI01000300_03901275_03902800
CI01000300_03773519_03831065.mRNA mRNA upstream 79952 3773362 ~ 3831422 (+) True CI01000300_03773519_03831065
CI01000300_03769789_03773233.mRNA mRNA upstream 138112 3768199 ~ 3773262 (+) True CI01000300_03769789_03773233
CI01000300_03752633_03755353.mRNA mRNA upstream 154514 3752633 ~ 3756860 (+) True CI01000300_03752633_03755353
CI01000300_03744731_03749017.mRNA mRNA upstream 162351 3744410 ~ 3749023 (+) True CI01000300_03744731_03749017
CI01000300_03924558_03934407.mRNA mRNA downstream 10565 3924558 ~ 3935360 (+) True CI01000300_03924558_03934407
CI01000300_03954605_03969070.mRNA mRNA downstream 40612 3954605 ~ 3970439 (+) True CI01000300_03954605_03969070
CI01000300_03972562_03976190.mRNA mRNA downstream 58569 3972562 ~ 3976225 (+) True CI01000300_03972562_03976190
CI01000300_03981015_03991839.mRNA mRNA downstream 67022 3981015 ~ 3992010 (+) True CI01000300_03981015_03991839
CI01000300_03994394_03997804.mRNA mRNA downstream 80401 3994394 ~ 3998763 (+) True CI01000300_03994394_03997804
TU471334 other upstream 9223 3901950 ~ 3902151 (+) True G410258
TU471035 other upstream 638976 3271685 ~ 3272398 (+) True G409984
TU470056 other upstream 1597480 2313409 ~ 2313894 (+) True CI01000300_02313596_02320912
TU469855 other upstream 2152338 1749900 ~ 1759036 (+) False G408928
TU469856 other upstream 2152338 1749900 ~ 1759036 (+) True G408928
TU471472 other downstream 209705 4123698 ~ 4124416 (+) True G410382
TU471478 other downstream 281653 4195646 ~ 4196555 (+) True G410388
TU472695 other downstream 1977074 5891067 ~ 5892425 (+) True CI01000300_05891147_05892754
TU473010 other downstream 2555252 6469245 ~ 6469705 (+) False G411777
TU474898 other downstream 5030490 8944483 ~ 8948603 (+) True G413459

Expression Profile