RNA id: TU472320


Basic Information

Item Value
RNA id TU472320
length 451
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G411146
representative False

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 5208833 ~ 5213005 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTGTGAGACACCTAGTGTCAGAAGAGACTCGAGCTGGGTTTGGTGAGTGAAGGTTAAGACTATACTTTCAGGGATCATTTCTATAGTTTTTAACTAGGAAATGTATTGAGAAAGTGATGAGTCTCCCAAACCACGATGATGAGACGTGATACTCTTTTCTGAGCGTGAATCGGGTGTAGAGTAATGATTCAGTTCATAAGCTCTATATCATTGATGAACGTTCCTTTCTGTTTAATACGGTTAGGAGGAAAGGAGTATGATCAGAGTGGTTCTTAAATTAACATTTTATGTTAGTTGAGTAAAACATTAGACTGAATTGATAATGGAAATTATTGGAGTTGTTTTCAGTGATAGTATAAAGTTATTAGATGTAGTTGTCATACAGTAGTATGTAATAGGTTGAAAATAAGTTTGTTATTGGTTAAATTACATATGGAATGTTGATATAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472330 lncRNA upstream 6853 5201535 ~ 5201980 (+) True G411152
TU472352 lncRNA upstream 9581 5199039 ~ 5199252 (+) True G411174
TU472347 lncRNA upstream 34725 5173190 ~ 5174108 (+) True G411169
TU472346 lncRNA upstream 36395 5171435 ~ 5172438 (+) True G411168
TU472340 lncRNA upstream 55252 5153269 ~ 5153581 (+) True G411162
TU472327 lncRNA downstream 91295 5301843 ~ 5303111 (+) True CI01000300_05259191_05302329
TU472461 lncRNA downstream 217511 5428059 ~ 5428306 (+) True G411279
TU472484 lncRNA downstream 247403 5457951 ~ 5458151 (+) True G411301
TU472488 lncRNA downstream 257931 5468479 ~ 5468829 (+) True G411305
TU472548 lncRNA downstream 340430 5550978 ~ 5555910 (+) True G411361
CI01000300_05176333_05206119.mRNA mRNA upstream 1229 5176333 ~ 5207604 (+) True CI01000300_05176333_05206119
CI01000300_05031151_05064873.mRNA mRNA upstream 143269 5030948 ~ 5065564 (+) True CI01000300_05031151_05064873
CI01000300_05022837_05027540.mRNA mRNA upstream 179918 5022837 ~ 5028915 (+) True CI01000300_05022837_05027540
CI01000300_04465330_04479739.mRNA mRNA upstream 727595 4465098 ~ 4481238 (+) True CI01000300_04465330_04479739
CI01000300_04443587_04462530.mRNA mRNA upstream 746114 4443587 ~ 4462719 (+) True CI01000300_04443587_04462530
CI01000300_05217150_05224947.mRNA mRNA downstream 5540 5216088 ~ 5225301 (+) True CI01000300_05217150_05224947
CI01000300_05259191_05302329.mRNA mRNA downstream 48058 5258606 ~ 5302699 (+) False CI01000300_05259191_05302329
CI01000300_05306807_05337120.mRNA mRNA downstream 96259 5306807 ~ 5337206 (+) True CI01000300_05306807_05337120
CI01000300_05747200_05752154.mRNA mRNA downstream 536249 5746797 ~ 5752159 (+) True CI01000300_05747200_05752154
CI01000300_05768567_05786736.mRNA mRNA downstream 557849 5768397 ~ 5786830 (+) True CI01000300_05768567_05786736
TU471478 other upstream 1012278 4195646 ~ 4196555 (+) True G410388
TU471472 other upstream 1084417 4123698 ~ 4124416 (+) True G410382
TU471334 other upstream 1306682 3901950 ~ 3902151 (+) True G410258
TU471035 other upstream 1936435 3271685 ~ 3272398 (+) True G409984
TU470056 other upstream 2894939 2313409 ~ 2313894 (+) True CI01000300_02313596_02320912
TU472695 other downstream 680519 5891067 ~ 5892425 (+) True CI01000300_05891147_05892754
TU473010 other downstream 1258697 6469245 ~ 6469705 (+) False G411777
TU474898 other downstream 3733935 8944483 ~ 8948603 (+) True G413459
TU475774 other downstream 5159363 10369911 ~ 10373837 (+) False G414249
TU475776 other downstream 5159363 10369911 ~ 10373898 (+) True G414249

Expression Profile