RNA id: TU472710


Basic Information

Item Value
RNA id TU472710
length 401
lncRNA type intronic
GC content 0.34
exon number 1
gene id G411511
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 5933522 ~ 5933922 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAGAAGATACTCAAGTTCCACTGACCACTAGACAATTCATTCCTCTGATGAGATAGCGCCCTCGTGTGGTTGAACACGTGACAGTCTGAATATTTATTAAATTTACGAATTATGGTGGTTAAGAAGCAAGAACTGGTAAACCTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAGATTTTCATGACTAAAAGTTCCGTTAAATGTTTCTCGAAATGTTTTATTTTGTTGTATAGGCTATGTTGTGTTGAAAGATAGATAGATGTTTCACAGTCAGCAAATTATGTGTCCTCTAACTCTGTTTCATGTGCTGAAATGTTGATTTATCCGACAGCCAGACCACCATAAATTCACAAAGCATTACTATTCCATTATCAGCAGCTGTAGGTGGTGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472704 lncRNA upstream 28069 5905243 ~ 5905453 (+) True G411505
TU472702 lncRNA upstream 31126 5902036 ~ 5902396 (+) True G411503
TU472673 lncRNA upstream 67877 5864875 ~ 5865645 (+) True G411474
TU472668 lncRNA upstream 95217 5838081 ~ 5838305 (+) True G411470
TU472662 lncRNA upstream 98454 5834857 ~ 5835068 (+) True G411464
TU472711 lncRNA downstream 11 5933933 ~ 5934718 (+) True G411512
TU472712 lncRNA downstream 972 5934894 ~ 5935121 (+) True G411513
TU472719 lncRNA downstream 36801 5970723 ~ 5976635 (+) True G411517
TU472739 lncRNA downstream 100725 6034647 ~ 6107265 (+) False G411536
TU472740 lncRNA downstream 100725 6034647 ~ 6107534 (+) True G411536
CI01000300_05891147_05892754.mRNA mRNA upstream 40698 5891021 ~ 5892824 (+) False CI01000300_05891147_05892754
CI01000300_05841871_05849693.mRNA mRNA upstream 82904 5841610 ~ 5850618 (+) True CI01000300_05841871_05849693
CI01000300_05791658_05831583.mRNA mRNA upstream 101298 5791016 ~ 5832224 (+) True CI01000300_05791658_05831583
CI01000300_05768567_05786736.mRNA mRNA upstream 146692 5768397 ~ 5786830 (+) True CI01000300_05768567_05786736
CI01000300_05747200_05752154.mRNA mRNA upstream 181363 5746797 ~ 5752159 (+) True CI01000300_05747200_05752154
CI01000300_05936720_05938628.mRNA mRNA downstream 2074 5935996 ~ 5939057 (+) True CI01000300_05936720_05938628
CI01000300_05952579_05954888.mRNA mRNA downstream 18657 5952579 ~ 5954892 (+) True CI01000300_05952579_05954888
CI01000300_06064983_06069084.mRNA mRNA downstream 130831 6064753 ~ 6069593 (+) True CI01000300_06064983_06069084
CI01000300_06074165_06081192.mRNA mRNA downstream 138076 6071998 ~ 6081934 (+) True CI01000300_06074165_06081192
CI01000300_06421690_06424597.mRNA mRNA downstream 487768 6421690 ~ 6424603 (+) True CI01000300_06421690_06424597
TU472695 other upstream 41097 5891067 ~ 5892425 (+) True CI01000300_05891147_05892754
TU471478 other upstream 1736967 4195646 ~ 4196555 (+) True G410388
TU471472 other upstream 1809106 4123698 ~ 4124416 (+) True G410382
TU471334 other upstream 2031371 3901950 ~ 3902151 (+) True G410258
TU471035 other upstream 2661124 3271685 ~ 3272398 (+) True G409984
TU473010 other downstream 535323 6469245 ~ 6469705 (+) False G411777
TU474898 other downstream 3010561 8944483 ~ 8948603 (+) True G413459
TU475774 other downstream 4435989 10369911 ~ 10373837 (+) False G414249
TU475776 other downstream 4435989 10369911 ~ 10373898 (+) True G414249
TU476000 other downstream 4666014 10599936 ~ 10604363 (+) True G414454

Expression Profile