Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU474766 |
| length | 1206 |
| lncRNA type | antisense_over |
| GC content | 0.42 |
| exon number | 5 |
| gene id | G413347 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000300 |
| NCBI id | null |
| chromosome length | 11740502 |
| location | 8558594 ~ 8560835 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU474714 | lncRNA | upstream | 107784 | 8450499 ~ 8450810 (+) | True | G413304 |
| TU474700 | lncRNA | upstream | 132375 | 8425964 ~ 8426219 (+) | True | G413290 |
| TU474690 | lncRNA | upstream | 147171 | 8396682 ~ 8411423 (+) | True | G413280 |
| TU474691 | lncRNA | upstream | 164638 | 8393168 ~ 8393956 (+) | True | G413281 |
| TU474587 | lncRNA | upstream | 252332 | 8305945 ~ 8306262 (+) | True | G413182 |
| TU474737 | lncRNA | downstream | 1864 | 8562699 ~ 8568404 (+) | False | G413325 |
| TU474738 | lncRNA | downstream | 7803 | 8568638 ~ 8568757 (+) | True | G413325 |
| TU474796 | lncRNA | downstream | 98213 | 8659048 ~ 8707352 (+) | True | G413376 |
| TU474805 | lncRNA | downstream | 112984 | 8673819 ~ 8674215 (+) | True | G413385 |
| TU474825 | lncRNA | downstream | 177811 | 8738646 ~ 8738880 (+) | True | G413405 |
| CI01000300_08319762_08322122.mRNA | mRNA | upstream | 236300 | 8319762 ~ 8322294 (+) | True | CI01000300_08319762_08322122 |
| CI01000300_08252260_08318173.mRNA | mRNA | upstream | 239980 | 8252260 ~ 8318614 (+) | True | CI01000300_08252260_08318173 |
| CI01000300_08229980_08248846.mRNA | mRNA | upstream | 309748 | 8229980 ~ 8248846 (+) | True | CI01000300_08229980_08248846 |
| CI01000300_08091709_08137762.mRNA | mRNA | upstream | 419846 | 8091583 ~ 8138748 (+) | True | CI01000300_08091709_08137762 |
| CI01000300_07989533_07994134.mRNA | mRNA | upstream | 564158 | 7989533 ~ 7994436 (+) | True | CI01000300_07989533_07994134 |
| CI01000300_08567722_08574695.mRNA | mRNA | downstream | 6887 | 8567722 ~ 8575589 (+) | False | CI01000300_08567722_08574695 |
| CI01000300_08599231_08604382.mRNA | mRNA | downstream | 38396 | 8599231 ~ 8604927 (+) | True | CI01000300_08599231_08604382 |
| CI01000300_08713685_08718935.mRNA | mRNA | downstream | 152850 | 8713685 ~ 8719736 (+) | True | CI01000300_08713685_08718935 |
| CI01000300_08874463_08915149.mRNA | mRNA | downstream | 313628 | 8874463 ~ 8915221 (+) | True | CI01000300_08874463_08915149 |
| CI01000300_08917691_08926730.mRNA | mRNA | downstream | 356856 | 8917691 ~ 8927877 (+) | True | CI01000300_08917691_08926730 |
| TU473010 | other | upstream | 2088889 | 6469245 ~ 6469705 (+) | False | G411777 |
| TU472695 | other | upstream | 2666169 | 5891067 ~ 5892425 (+) | True | CI01000300_05891147_05892754 |
| TU471478 | other | upstream | 4362039 | 4195646 ~ 4196555 (+) | True | G410388 |
| TU471472 | other | upstream | 4434178 | 4123698 ~ 4124416 (+) | True | G410382 |
| TU471334 | other | upstream | 4656443 | 3901950 ~ 3902151 (+) | True | G410258 |
| TU474898 | other | downstream | 383648 | 8944483 ~ 8948603 (+) | True | G413459 |
| TU475774 | other | downstream | 1809076 | 10369911 ~ 10373837 (+) | False | G414249 |
| TU475776 | other | downstream | 1809076 | 10369911 ~ 10373898 (+) | True | G414249 |
| TU476000 | other | downstream | 2039101 | 10599936 ~ 10604363 (+) | True | G414454 |
| TU475996 | other | downstream | 2085356 | 10646191 ~ 10663487 (+) | False | G414452 |
