RNA id: TU474796



Basic Information


Item Value
RNA id TU474796
length 1263
lncRNA type read_through
GC content 0.37
exon number 2
gene id G413376
representative True

Chromosome Information


Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 8659048 ~ 8707352 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGAAATATGCTTAAATCATAAAATGTAATTAGAGAGACTAATGGTAGGAAACGGGAATCCACTGTAGTGGATTACTGACAAGAACAATATAGCAAGTTTTACATTCACAGGCTCAATAATTGTATTTTAAGTGACTATTTGCTACAGATGTAAATGGCACCTGCACTGGCACATAGAGCAGCTATTTGCTATTTGTCAATAACTAGCAAAAATACAAATTTGATTATGTCAAAGTACCTGGCAGGTACAGCATGTGCTTTGGTATTTTTTTGTGTAAATGACCTGAGCTCTTAAAAAATGCAAATACTATGTTACTATTACACCATTATAATAGTATATAGATGATCGTTCAAAAGTTTGGGATCAGTAAGAATTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTGTGCTTATGATTTTTATTACATAATTTAAATACACAATTTTAAGGCATTTGCAAAGATGCAATAATTGGCCTTTAGTTTGCTTTTGAATATAGAACTATTATTATACATAACAATTATTCACATTAAATCTCATCTAACAGTGAATGTCAATATACACATACAAACGTTCCCTTTACTCCAACTGTAGTGTGTTAATGTTTGCTTTAAGTAGTCAATTAATACTGTATGTAGCTTCTGAATTCCACAATGCTGACATGTAAACTGTTTGTCATCCCACACTAAGGGAAATATTCATGTAAACACATCTGAAAATATTCAACGGTTTTATATAGTCGACTCATTACACAACAGTACTGGAATACTGGCTATATGCAAAGGAAACAATGGCGTGCACACACAAGCAAATATTTCCTCTCTTTGTGGTGTAAATCTCATTTAATATTTTAAGCCATTAAGACACCTGTGCTATTGCTGTTGGAGCAAATGGGAGTAGAGTGCTTCTGTCTCTGTACATATCTGGCATGTTTTTAAAGGACTCCATTCTGGCGACGAGCTCTGTCCAAATTTGCAGCCTTTTCCACCAATCTACTGTTGTGGTTCCTTTGGAGACCGTGTCCGCTGTCACCATGGTTACAACTAAACCACCTCTTCGTGCTGGCGGCGCAGGTCTCGAACCGTTTTAGTTTTGGTGAAGCATCCGCAGTCCAGCAGCTCGTAGAGGAAAGCCAGTGTGGCGAGGGAGAGGATGGTAAGGATGAAGAGGAGGAGAATGATGAAGCAGGCAACATTCCAGCCATCATGGAAGGGATAGATCTGCTGGATCAGAGCAGAACTGCTGGACATGTTCATACTGCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU474738 lncRNA upstream 83435 8568638 ~ 8568757 (+) True G413325
TU474737 lncRNA upstream 90644 8562699 ~ 8568404 (+) False G413325
TU474766 lncRNA upstream 98213 8558594 ~ 8560835 (+) True G413347
TU474764 lncRNA upstream 98544 8558594 ~ 8560504 (+) False G413347
TU474765 lncRNA upstream 98544 8558594 ~ 8560504 (+) False G413347
TU474825 lncRNA downstream 31294 8738646 ~ 8738880 (+) True G413405
TU474831 lncRNA downstream 33249 8740601 ~ 8740904 (+) True G413408
TU474832 lncRNA downstream 33554 8740906 ~ 8741320 (+) True G413409
TU474863 lncRNA downstream 76588 8783940 ~ 8785325 (+) True G413437
TU474896 lncRNA downstream 150335 8857687 ~ 8944779 (+) False G413459
CI01000300_08599231_08604382.mRNA mRNA upstream 54121 8599231 ~ 8604927 (+) True CI01000300_08599231_08604382
CI01000300_08567722_08574695.mRNA mRNA upstream 83459 8567722 ~ 8575589 (+) False CI01000300_08567722_08574695
CI01000300_08319762_08322122.mRNA mRNA upstream 336754 8319762 ~ 8322294 (+) True CI01000300_08319762_08322122
CI01000300_08252260_08318173.mRNA mRNA upstream 340434 8252260 ~ 8318614 (+) True CI01000300_08252260_08318173
CI01000300_08229980_08248846.mRNA mRNA upstream 410202 8229980 ~ 8248846 (+) True CI01000300_08229980_08248846
CI01000300_08713685_08718935.mRNA mRNA downstream 6333 8713685 ~ 8719736 (+) True CI01000300_08713685_08718935
CI01000300_08874463_08915149.mRNA mRNA downstream 167111 8874463 ~ 8915221 (+) True CI01000300_08874463_08915149
CI01000300_08917691_08926730.mRNA mRNA downstream 210339 8917691 ~ 8927877 (+) True CI01000300_08917691_08926730
CI01000300_08949418_08957810.mRNA mRNA downstream 241969 8949321 ~ 8957857 (+) True CI01000300_08949418_08957810
CI01000300_08979290_08987162.mRNA mRNA downstream 270881 8978233 ~ 8988778 (+) True CI01000300_08979290_08987162
TU473010 other upstream 2189343 6469245 ~ 6469705 (+) False G411777
TU472695 other upstream 2766623 5891067 ~ 5892425 (+) True CI01000300_05891147_05892754
TU471478 other upstream 4462493 4195646 ~ 4196555 (+) True G410388
TU471472 other upstream 4534632 4123698 ~ 4124416 (+) True G410382
TU471334 other upstream 4756897 3901950 ~ 3902151 (+) True G410258
TU474898 other downstream 237131 8944483 ~ 8948603 (+) True G413459
TU475774 other downstream 1662559 10369911 ~ 10373837 (+) False G414249
TU475776 other downstream 1662559 10369911 ~ 10373898 (+) True G414249
TU476000 other downstream 1892584 10599936 ~ 10604363 (+) True G414454
TU475996 other downstream 1938839 10646191 ~ 10663487 (+) False G414452

Expression Profile