RNA id: TU474825


Basic Information

Item Value
RNA id TU474825
length 235
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G413405
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 8738646 ~ 8738880 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTAGATCCACACTAGAACTTTTTGAGACTTTCTGAAGCATCTTGCATTTTGTTTTGGGGCTGAGTGTTCAGCATTATGGATATTTTATAGTGTTGCCACCAGTGTTGGGTGTAACGCGTTACTGTAATTAAATTACTTATCCACTGAAAAAGTAAAGTAAGGGATTACTGTTCATTTTTAGGTAACTGAATTACAGTTACTTATAATGTACTGTTTTGCGTTACATACTGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474796 lncRNA upstream 31294 8659048 ~ 8707352 (+) True G413376
TU474805 lncRNA upstream 64431 8673819 ~ 8674215 (+) True G413385
TU474738 lncRNA upstream 163033 8568638 ~ 8568757 (+) True G413325
TU474737 lncRNA upstream 170242 8562699 ~ 8568404 (+) False G413325
TU474766 lncRNA upstream 177811 8558594 ~ 8560835 (+) True G413347
TU474831 lncRNA downstream 1721 8740601 ~ 8740904 (+) True G413408
TU474832 lncRNA downstream 2026 8740906 ~ 8741320 (+) True G413409
TU474863 lncRNA downstream 45060 8783940 ~ 8785325 (+) True G413437
TU474896 lncRNA downstream 118807 8857687 ~ 8944779 (+) False G413459
TU474894 lncRNA downstream 205603 8944483 ~ 8945654 (+) False G413459
CI01000300_08713685_08718935.mRNA mRNA upstream 18910 8713685 ~ 8719736 (+) True CI01000300_08713685_08718935
CI01000300_08599231_08604382.mRNA mRNA upstream 133719 8599231 ~ 8604927 (+) True CI01000300_08599231_08604382
CI01000300_08567722_08574695.mRNA mRNA upstream 163057 8567722 ~ 8575589 (+) False CI01000300_08567722_08574695
CI01000300_08319762_08322122.mRNA mRNA upstream 416352 8319762 ~ 8322294 (+) True CI01000300_08319762_08322122
CI01000300_08252260_08318173.mRNA mRNA upstream 420032 8252260 ~ 8318614 (+) True CI01000300_08252260_08318173
CI01000300_08874463_08915149.mRNA mRNA downstream 135583 8874463 ~ 8915221 (+) True CI01000300_08874463_08915149
CI01000300_08917691_08926730.mRNA mRNA downstream 178811 8917691 ~ 8927877 (+) True CI01000300_08917691_08926730
CI01000300_08949418_08957810.mRNA mRNA downstream 210441 8949321 ~ 8957857 (+) True CI01000300_08949418_08957810
CI01000300_08979290_08987162.mRNA mRNA downstream 239353 8978233 ~ 8988778 (+) True CI01000300_08979290_08987162
CI01000300_09025773_09045147.mRNA mRNA downstream 285569 9024449 ~ 9045662 (+) False CI01000300_09025773_09045147
TU473010 other upstream 2268941 6469245 ~ 6469705 (+) False G411777
TU472695 other upstream 2846221 5891067 ~ 5892425 (+) True CI01000300_05891147_05892754
TU471478 other upstream 4542091 4195646 ~ 4196555 (+) True G410388
TU471472 other upstream 4614230 4123698 ~ 4124416 (+) True G410382
TU471334 other upstream 4836495 3901950 ~ 3902151 (+) True G410258
TU474898 other downstream 205603 8944483 ~ 8948603 (+) True G413459
TU475774 other downstream 1631031 10369911 ~ 10373837 (+) False G414249
TU475776 other downstream 1631031 10369911 ~ 10373898 (+) True G414249
TU476000 other downstream 1861056 10599936 ~ 10604363 (+) True G414454
TU475996 other downstream 1907311 10646191 ~ 10663487 (+) False G414452

Expression Profile