RNA id: TU474832


Basic Information

Item Value
RNA id TU474832
length 415
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G413409
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 8740906 ~ 8741320 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACCCATTTTAATACTGTCCAATTATCAAGTAATATCCATCATGTATATTTACAATATGTGTAGATTTATATATTATTTTTGTGACAATTATATTTACCCAGCACACTGAAGGTATTTTTATTTCATATTCATGTCTGGTGCACTGTGACAAGAATGGGCATGTGTGGTTAAAACACTTTTGATGTTAGAGTGGGCAGCCTGGGTAAAAATGTCACAGGCAGCACTAAGTGATCACAGAGCCCATGCTGTGATCCGGCCCACATCCTCTCCAGTCTCATTTAATTAACCTGAGACACAGGCCAGAGAGAAGGAGGCGAGGAAGAAGACTGCAGTCTCTGCCATCTGTCTAGATCAGTGGTTCTCAACCGGGGGCAGTGGCCCACTGAGGGGCCTCAGCAAACCTTTCAAGGGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474831 lncRNA upstream 2 8740601 ~ 8740904 (+) True G413408
TU474825 lncRNA upstream 2026 8738646 ~ 8738880 (+) True G413405
TU474796 lncRNA upstream 33554 8659048 ~ 8707352 (+) True G413376
TU474805 lncRNA upstream 66691 8673819 ~ 8674215 (+) True G413385
TU474738 lncRNA upstream 165293 8568638 ~ 8568757 (+) True G413325
TU474863 lncRNA downstream 42620 8783940 ~ 8785325 (+) True G413437
TU474896 lncRNA downstream 116367 8857687 ~ 8944779 (+) False G413459
TU474894 lncRNA downstream 203163 8944483 ~ 8945654 (+) False G413459
TU474897 lncRNA downstream 203163 8944483 ~ 8945654 (+) False G413459
TU474963 lncRNA downstream 236095 8977415 ~ 8977692 (+) True G413523
CI01000300_08713685_08718935.mRNA mRNA upstream 21170 8713685 ~ 8719736 (+) True CI01000300_08713685_08718935
CI01000300_08599231_08604382.mRNA mRNA upstream 135979 8599231 ~ 8604927 (+) True CI01000300_08599231_08604382
CI01000300_08567722_08574695.mRNA mRNA upstream 165317 8567722 ~ 8575589 (+) False CI01000300_08567722_08574695
CI01000300_08319762_08322122.mRNA mRNA upstream 418612 8319762 ~ 8322294 (+) True CI01000300_08319762_08322122
CI01000300_08252260_08318173.mRNA mRNA upstream 422292 8252260 ~ 8318614 (+) True CI01000300_08252260_08318173
CI01000300_08874463_08915149.mRNA mRNA downstream 133143 8874463 ~ 8915221 (+) True CI01000300_08874463_08915149
CI01000300_08917691_08926730.mRNA mRNA downstream 176371 8917691 ~ 8927877 (+) True CI01000300_08917691_08926730
CI01000300_08949418_08957810.mRNA mRNA downstream 208001 8949321 ~ 8957857 (+) True CI01000300_08949418_08957810
CI01000300_08979290_08987162.mRNA mRNA downstream 236913 8978233 ~ 8988778 (+) True CI01000300_08979290_08987162
CI01000300_09025773_09045147.mRNA mRNA downstream 283129 9024449 ~ 9045662 (+) False CI01000300_09025773_09045147
TU473010 other upstream 2271201 6469245 ~ 6469705 (+) False G411777
TU472695 other upstream 2848481 5891067 ~ 5892425 (+) True CI01000300_05891147_05892754
TU471478 other upstream 4544351 4195646 ~ 4196555 (+) True G410388
TU471472 other upstream 4616490 4123698 ~ 4124416 (+) True G410382
TU471334 other upstream 4838755 3901950 ~ 3902151 (+) True G410258
TU474898 other downstream 203163 8944483 ~ 8948603 (+) True G413459
TU475774 other downstream 1628591 10369911 ~ 10373837 (+) False G414249
TU475776 other downstream 1628591 10369911 ~ 10373898 (+) True G414249
TU476000 other downstream 1858616 10599936 ~ 10604363 (+) True G414454
TU475996 other downstream 1904871 10646191 ~ 10663487 (+) False G414452

Expression Profile