RNA id: TCONS_00021904


Basic Information

Item Value
RNA id TCONS_00021904
length 3439
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id XLOC_009782
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 14153990 ~ 14158725 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGATGTTCGTTTTACTCCAGTTGAGCAAGACTCCATCAACAAGCTTCCAGCTGTCATTAAGTTTCTAGCAGCACACTGAACTTCACCAACACTCCTTTGGGCTGTCATTTGACTAAATGAAGTGCTAGCAAGATTGCTGTTCCTCAGGAAAGTGTGATGTTGGATGCTTCTGTCAACTGGCGGGGGTGATGGTTGATCTTCATCAATTTCATCCTCATCCTCCTGGTATCCTGTTCCACCTTCCTGGATTGAGCCTCTGTTCTTCGACTCTACCTGAACACTCTCTCTCCACCTCCATGGCTGCCGATGCTCTGCCCACCTCACTTTTGAAATTGGTCTTAGGTGCGCAGGTCCGATATATGAAAGCGGTGAAGTTTTGTGTTTGTCAGCTTGTTTTGAGGGTGCTGAGGTAGAGCATTGGTAATCTGTTGACAGACCTAGTCCCCTTCTGAAATGGTCTTTTCTAGGGTTACTTCGTCCAAGCAAACCGCCTAGTCCTTCTCTTTCTCTAAACCTATCATCCACAAATCTTTTATCTCTACCTTGCTCTCTGTCATCTTCTCTTTGCCAGCTATTTCTACTGAACCAGTCACTAGAGGAATGAGATGTTAGATTAGTGTAAGTCCCATGTGGCTTCCCATGACAAACTTCAGATTCACGCCTTAGAAATTTGTGCTTCCTTTTATGGAACTTTGATGGGCTTAAAATTGGATTTTTGGAGTAGGGATGTACATATGAGGGTAAAAATGGTGATGAGGGGTAAATAGTTGCAGATGGAGGGTATCCTCTATAGAGTCCAAAACCAAACGAAGTGGTAGGAAGAGGCATTTTGTAGGGCGAGTGGTAACAACCACCTGCTGACAGTGGGAAGCCAAGTTTATGTACTACTGGACAATGAGTGACAATATGTTCACCTGGTTGTGAGGGGCAGCCATTGTTCCTTTTAAAATCTGCCAAGCCAACATAATGCAGAGAGTCACGAGAAAATTCTGACTGAGGAGAGTAGTAACCACTGAAGTTGATTTGAAACATAGTTGGATGGTGAAGGTTTTGCGGCAGACACTTTAGAACGTGAGGGTGAGCTTTGCCCTTCCCACTCTTTCTTCCTGATTTTGCTTCATCCCCACAACCCCGAGATGAAAGATGATGCACAATATGAATTTCACTAAGCCTGACCACTAACTCCTCAACCTCTGCCAGAAATGCTGGGTCTTGCCGTTTGGCCCTGAGTTGAAGATACTTTTTCTTGCATTTGTGTTTATGTCTCCTAATCTTATCGTGGCTAAAGCAATTATGTCCTTTTCTATGACACTTGTATTTGAGCCTTTCTTGCTCCATCAGGACTGATCGTGCAAGGTGTGTTGCTCTGTGATTTTGAATCCTTACAGAACCTAACTGTGATGTGGCTGAAGGGCAAGGTGCTGGCTGTGAAGAGGTGGGATGTTTAGATTTCTCTTCAGGCAATGCTTTAAACTTTTGGGAATTTGTTACCTTTGGAGAAGAATGTTGATCATATTTACGGTTGCCAGGATAAAGTTTTCTCCGGAAAGAACTAATACTAGAAGAAGAGGGTTTGAGTTGTTTAAATGAATAGGGGGAGTTGTGCAAAGCAGTTTGGCCATCAAATGAATGACTCTGTTCACCAGAGGTGGACCAATTTAACTGATTTGAAGATTCTGTTGAGACTTGCGGAGTCTTTGGACTCTGAACTTGGTCCGAGTCTTGGCCAAAAGTTTCCCTTTGAGCTTTAGGTTTACGACCTCTTCTTTTTCCTATGTAGATTGTCCCACGTTTGCTGACGTTAATTTGAGGACCAAGTTTCCCCCCAAAAGATGTAACAAGTGAGGATAAAGATTGTGCACTTTCGGACACTGAACATTCGGCATCCCCTTTATTGTCTTTTTGAGCCAAATCAGTTGTGCAAGTTTGGCTTTGCCCTGATAGAAACTGCGTGAGTACTTTATCTTTCCTCTTCACTCTcattttgttgatatttttgaTAATTGACCTCATTATTAACCTATTTCGTTTGCGGCAGATTTGTGCATCTCTAGCTCTGGACACTGAAGGTTTGAGTTTTCCTTCAGCACCTGTCTTTCCTGATGCTAAGTGTAGTGATTTAGATTTTTTAGTCTGAGCAGACAGGGAACATTTTGGATGGCTTTGTATTTTGGGTGTTGGATTTGGGAGTTTCAAGCCATCTTCTGGCCTAGGGACATTTGAGTGCTCAAGTATAGAGAACTTAGTAGAAGACTGCTGAGACTTACTTCCCTGAGGAGACTCATCCATCCTAGTTATTTTTGGTCGACCCCTTCTCTTAGTAGGGACCTCAATGAACGCGCTTTCTGATCTTGGGGATGTTTTTTGTAGTTCTTTTGATTTAAGAGGTTGTCTGACTGGGTCTTGTTTACCCTGCTTTGATGGCAATTTCTTCAAGGACTTCATGGAAAGATCTCTTTTACCTTTTGATTTTTGAGGTATAATTTTACAGGCAGTGGGATTAACATTAGAAGCTCCCAAATCCATATTCTCCCCCTGATTTACTATATTTGAAATCTGAACAGATTTTTGTGTCCTTTGTGAAATGGTGTCTTGTTTGGGGTGTAAGGGTGGCTCTTCACTTTGAGCAGAACTGTTAAACTGAGAATCTGCACAGCTGGGAGTTCGAGGGGAACATTTCACATTTTCTTCCTGATTTGAACTACGCCtagttcttttctttttcttttcaatgacatgcCCCTCTCTGCTGACATCTTTTGACTGCACAGCAACAGTTTGAGCCGGTTCCATAGTCACTTTTTGGGAGTCATCTATGACTTCACTTCCACTGTGCTTCTTGCACCTTTCTCTGTTCTCCGGTAACTCTGGTACACTAGTGCTGTTCTCAGAAGTTGCTGATTCTGCAGATTTATCTGTGGCAGGAGGAAGCAATGGTGCATTGACAGAGGGACTAGGCTGATGCAGTAAACCATTTTCTCTACTCCTATTGTTAGTATTGTTGCTAGACATGTTTTTGGAAGATGCATAATCACCATCCTCTTTCTCATTTGCAATCAAAACCCTGTCAACATTTGTCTCCCGTGTTCTAGAAGTCTTTTTTGGAGGACGGAGAGTTTGCCTTAGAGAATTCTCACTACATCTTTTTGGAGATGACTTGCTTTCATGGTGAGTTTCAAGGCTGGAAGAAGACTGCTGAGATATCTGAGTGTTCTGTGTCATATTCTTTGAGCTATCTGAACTAGGGGAGGAGGTCATTGCTTCCTCAGTCGGGAGATCATCACTCTTTTCTTTTTGAGCATTTAAAACTTGTGTGCTGTCTTGTAGACTGGAGTTTTGTTGTAATGAGGAAGGCGGCGAAGGTGCAGCTGGAGGGGAATGCGTCTGCTTCAAAAAGGAAATGTTGTGTTTTTCAGTCTTATTAATACTCTTCTGTCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021903 lncRNA upstream 62145 14088371 ~ 14091845 (+) True XLOC_009781
TCONS_00019559 lncRNA upstream 142394 14010172 ~ 14011596 (+) False XLOC_009779
TCONS_00021690 lncRNA upstream 199843 13950017 ~ 13954147 (+) True XLOC_009777
TCONS_00021902 lncRNA upstream 208414 13942073 ~ 13945576 (+) True XLOC_009776
TCONS_00019547 lncRNA upstream 295161 13857574 ~ 13858829 (+) True XLOC_009772
TCONS_00019567 lncRNA downstream 50391 14209116 ~ 14212495 (+) True XLOC_009783
TCONS_00019569 lncRNA downstream 58058 14216783 ~ 14220351 (+) True XLOC_009784
TCONS_00021691 lncRNA downstream 302537 14461262 ~ 14493478 (+) True XLOC_009786
TCONS_00021692 lncRNA downstream 316131 14474856 ~ 14477117 (+) False XLOC_009787
TCONS_00021693 lncRNA downstream 316131 14474856 ~ 14481801 (+) True XLOC_009787
TCONS_00019564 mRNA upstream 64521 14078748 ~ 14089469 (+) False XLOC_009781
TCONS_00019565 mRNA upstream 65207 14078751 ~ 14088783 (+) False XLOC_009781
TCONS_00019561 mRNA upstream 98681 14029283 ~ 14055309 (+) False XLOC_009780
TCONS_00019563 mRNA upstream 103034 14033121 ~ 14050956 (+) True XLOC_009780
TCONS_00019562 mRNA upstream 103061 14029403 ~ 14050929 (+) False XLOC_009780
TCONS_00019566 mRNA downstream 42676 14201401 ~ 14215617 (+) False XLOC_009783
TCONS_00019568 mRNA downstream 57856 14216581 ~ 14231312 (+) False XLOC_009784
TCONS_00019570 mRNA downstream 90821 14249546 ~ 14280600 (+) True XLOC_009785
TCONS_00019574 mRNA downstream 429416 14588141 ~ 14671268 (+) False XLOC_009790
TCONS_00019575 mRNA downstream 429423 14588148 ~ 14675907 (+) False XLOC_009790
TCONS_00019534 other upstream 712357 13424548 ~ 13441633 (+) False XLOC_009767
TCONS_00019535 other upstream 712395 13424551 ~ 13441595 (+) False XLOC_009767
TCONS_00019518 other upstream 1773144 12380730 ~ 12380846 (+) True XLOC_009756
TCONS_00019517 other upstream 1853704 12300169 ~ 12300286 (+) True XLOC_009755
TCONS_00019511 other upstream 1908094 12241490 ~ 12245896 (+) False XLOC_009752
TCONS_00019585 other downstream 1707499 15866224 ~ 15867165 (+) True XLOC_009800
TCONS_00019587 other downstream 1995599 16154324 ~ 16154458 (+) True XLOC_009803
TCONS_00019609 other downstream 3358223 17516948 ~ 17517082 (+) True XLOC_009816
TCONS_00019610 other downstream 3412085 17570810 ~ 17570934 (+) True XLOC_009818
TCONS_00019630 other downstream 4906620 19065345 ~ 19128471 (+) False XLOC_009830

Expression Profile

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