RNA id: TCONS_00019567


Basic Information

Item Value
RNA id TCONS_00019567
length 829
lncRNA type retained_intron
GC content 0.42
exon number 4
gene id XLOC_009783
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 14201401 ~ 14215617 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGACAGACGGGCTCAGGGAAGTCCATTTCTCTGTGTCACACTCTGCATTACTGCTACACTCAGGGCTGGTTGATCCTGCATGTTCCTGATGCTCATCTGTGGGTTAAGAACTGTAAAGAGATGCTGCCCTCTACCTACAATCCCTTACGCTTTGACCAGCCAGTGCAAGCAACCCAGTGGCTGAAGGACTTCAAAATCACCAACGAACACTTTTTATCCAAGATAAAGACAACACGGCGATATGTTTGGACAAAGAGAGAGAGTACTGAAGAGGGCCGGACTTTAGGCGAGCTTATTGATCAGGGTGTGAACCGCATGAAGAGCAGCAGTGATGTGGTCGGTGCAGTGCTGCGAGAGCTGAGGCTTCAGGCAGGGGCTACCACAGAGGGCGAGGAGGTCTTTAAGTTGGCGGTGGCTGTGGATGGAGTAAATGCTCTTTGGGGCAACACAACTCTTAAAAAGGAAGACAGAACTATGGTATGGTCATGTACATttcacaggagggataataattttgtattattgGATATCCCATCTATAAAACCTAACTTTACGTAACAATTTTAGAATACTTATTATTATCTAGTCATTTGTATTGACCCTTtccacaagactgttatgattcGTGTAAGGGTCATGTGCATCTTAAATCTTCTAAGTCAGtgatttttcatcaagtaccacctcagagaaaaaattgtctctcaaAGTaacaccataatgaccagtattaaaatacagtagcgtaaCTACTGAccaaaaacgtcaacatttaaattaaaatgggcttttaaaagttaaaaatgataggttactgttcttaaaaa

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0001666 response to hypoxia biological_process
GO:0005761 mitochondrial ribosome cellular_component
GO:0005763 mitochondrial small ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03011 Ribosome
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-051129-2 Predicted to be a structural constituent of ribosome. Acts upstream of or within response to hypoxia. Predicted to be located in mitochondrial ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Is expressed in several structures, including alar plate midbrain region; gill; immature eye; liver; and nervous system. Orthologous to human DAP3 (death associated protein 3).

Ensembl:

ensembl_id ENSDART00000140513

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021904 lncRNA upstream 50391 14153990 ~ 14158725 (+) True XLOC_009782
TCONS_00021903 lncRNA upstream 117271 14088371 ~ 14091845 (+) True XLOC_009781
TCONS_00019559 lncRNA upstream 197520 14010172 ~ 14011596 (+) False XLOC_009779
TCONS_00021690 lncRNA upstream 254969 13950017 ~ 13954147 (+) True XLOC_009777
TCONS_00021902 lncRNA upstream 263540 13942073 ~ 13945576 (+) True XLOC_009776
TCONS_00019569 lncRNA downstream 4288 14216783 ~ 14220351 (+) True XLOC_009784
TCONS_00021691 lncRNA downstream 248767 14461262 ~ 14493478 (+) True XLOC_009786
TCONS_00021692 lncRNA downstream 262361 14474856 ~ 14477117 (+) False XLOC_009787
TCONS_00021693 lncRNA downstream 262361 14474856 ~ 14481801 (+) True XLOC_009787
TCONS_00019571 lncRNA downstream 266665 14479160 ~ 14484367 (+) True XLOC_009788
TCONS_00019564 mRNA upstream 119647 14078748 ~ 14089469 (+) False XLOC_009781
TCONS_00019565 mRNA upstream 120333 14078751 ~ 14088783 (+) False XLOC_009781
TCONS_00019561 mRNA upstream 153807 14029283 ~ 14055309 (+) False XLOC_009780
TCONS_00019563 mRNA upstream 158160 14033121 ~ 14050956 (+) True XLOC_009780
TCONS_00019562 mRNA upstream 158187 14029403 ~ 14050929 (+) False XLOC_009780
TCONS_00019568 mRNA downstream 4086 14216581 ~ 14231312 (+) False XLOC_009784
TCONS_00019570 mRNA downstream 37051 14249546 ~ 14280600 (+) True XLOC_009785
TCONS_00019574 mRNA downstream 375646 14588141 ~ 14671268 (+) False XLOC_009790
TCONS_00019575 mRNA downstream 375653 14588148 ~ 14675907 (+) False XLOC_009790
TCONS_00019576 mRNA downstream 375654 14588149 ~ 14602419 (+) True XLOC_009790
TCONS_00019534 other upstream 767483 13424548 ~ 13441633 (+) False XLOC_009767
TCONS_00019535 other upstream 767521 13424551 ~ 13441595 (+) False XLOC_009767
TCONS_00019518 other upstream 1828270 12380730 ~ 12380846 (+) True XLOC_009756
TCONS_00019517 other upstream 1908830 12300169 ~ 12300286 (+) True XLOC_009755
TCONS_00019511 other upstream 1963220 12241490 ~ 12245896 (+) False XLOC_009752
TCONS_00019585 other downstream 1653729 15866224 ~ 15867165 (+) True XLOC_009800
TCONS_00019587 other downstream 1941829 16154324 ~ 16154458 (+) True XLOC_009803
TCONS_00019609 other downstream 3304453 17516948 ~ 17517082 (+) True XLOC_009816
TCONS_00019610 other downstream 3358315 17570810 ~ 17570934 (+) True XLOC_009818
TCONS_00019630 other downstream 4852850 19065345 ~ 19128471 (+) False XLOC_009830

Expression Profile

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