RNA id: TU475965


Basic Information

Item Value
RNA id TU475965
length 370
lncRNA type intronic
GC content 0.33
exon number 1
gene id G414425
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 10416039 ~ 10416408 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCTGCAGTAGCTGGAGCCTCAGACACTTGCTCTTCTGTTGAAAAAGACTGTGTTTTGGACTTTTCTGACATGGCCTGGTGTTCATCTGGACCCTGCAGTAAAAATAGGGTTAACCCTGCTATTGCATTCTGGTCCATCTTGACAGGACTGGGAAGAGGTACATAATTTTATTTATTTATTTATTTTAAAAAATTTTTTTTTTTTAGTACGACGATTACATTTTGTAAGTGTGTTAACACCATTTATTTATTTTTTCTTTCTTTGTAAGAAATATAACCATTAAAACTACATTTTTTACACCTTTTGCATTTGTTTTTTGGTCCATTTTGATCCGAAACTGAACTGTGGCTTTATACATGAAATTATGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU475797 lncRNA upstream 4368 10410925 ~ 10411671 (+) True G414270
TU475801 lncRNA upstream 6971 10408783 ~ 10409068 (+) True G414274
TU475960 lncRNA upstream 7495 10408193 ~ 10408544 (+) True G414420
TU475793 lncRNA upstream 8347 10407292 ~ 10407692 (+) True G414266
TU475959 lncRNA upstream 9423 10406296 ~ 10406616 (+) True G414419
TU475963 lncRNA downstream 2151 10418559 ~ 10419139 (+) True G414423
TU475964 lncRNA downstream 3145 10419553 ~ 10419780 (+) True G414424
TU475972 lncRNA downstream 12407 10428815 ~ 10429144 (+) True G414432
TU475986 lncRNA downstream 138880 10555288 ~ 10556419 (+) True G414444
TU476001 lncRNA downstream 216319 10632727 ~ 10633580 (+) False G414455
CI01000300_10401994_10404248.mRNA mRNA upstream 11364 10401565 ~ 10404675 (+) True CI01000300_10401994_10404248
CI01000300_10387736_10392987.mRNA mRNA upstream 22997 10387176 ~ 10393042 (+) True CI01000300_10387736_10392987
CI01000300_10357507_10366851.mRNA mRNA upstream 49031 10357507 ~ 10367008 (+) True CI01000300_10357507_10366851
CI01000300_10167118_10172235.mRNA mRNA upstream 243804 10167118 ~ 10172235 (+) True CI01000300_10167118_10172235
CI01000300_10094312_10098589.mRNA mRNA upstream 317370 10093932 ~ 10098669 (+) True CI01000300_10094312_10098589
CI01000300_10445111_10492819.mRNA mRNA downstream 28703 10445111 ~ 10493542 (+) True CI01000300_10445111_10492819
CI01000300_10496235_10498777.mRNA mRNA downstream 79766 10496174 ~ 10498944 (+) True CI01000300_10496235_10498777
CI01000300_10604458_10604787.mRNA mRNA downstream 188050 10604458 ~ 10605033 (+) False CI01000300_10604458_10604787
CI01000300_10661680_10669987.mRNA mRNA downstream 245272 10661680 ~ 10671406 (+) False CI01000300_10661680_10669987
CI01000300_10675299_10675754.mRNA mRNA downstream 258181 10674589 ~ 10676912 (+) True CI01000300_10675299_10675754
TU475776 other upstream 42141 10369911 ~ 10373898 (+) True G414249
TU475774 other upstream 42202 10369911 ~ 10373837 (+) False G414249
TU474898 other upstream 1467436 8944483 ~ 8948603 (+) True G413459
TU473010 other upstream 3946334 6469245 ~ 6469705 (+) False G411777
TU472695 other upstream 4523614 5891067 ~ 5892425 (+) True CI01000300_05891147_05892754
TU476000 other downstream 183528 10599936 ~ 10604363 (+) True G414454
TU475996 other downstream 229783 10646191 ~ 10663487 (+) False G414452
TU476886 other downstream 1287076 11703484 ~ 11703623 (+) True G415198

Expression Profile