Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU475963 |
| length | 581 |
| lncRNA type | antisense_over |
| GC content | 0.42 |
| exon number | 1 |
| gene id | G414423 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000300 |
| NCBI id | null |
| chromosome length | 11740502 |
| location | 10418559 ~ 10419139 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU475965 | lncRNA | upstream | 2151 | 10416039 ~ 10416408 (+) | True | G414425 |
| TU475797 | lncRNA | upstream | 6888 | 10410925 ~ 10411671 (+) | True | G414270 |
| TU475801 | lncRNA | upstream | 9491 | 10408783 ~ 10409068 (+) | True | G414274 |
| TU475960 | lncRNA | upstream | 10015 | 10408193 ~ 10408544 (+) | True | G414420 |
| TU475793 | lncRNA | upstream | 10867 | 10407292 ~ 10407692 (+) | True | G414266 |
| TU475964 | lncRNA | downstream | 414 | 10419553 ~ 10419780 (+) | True | G414424 |
| TU475972 | lncRNA | downstream | 9676 | 10428815 ~ 10429144 (+) | True | G414432 |
| TU475986 | lncRNA | downstream | 136149 | 10555288 ~ 10556419 (+) | True | G414444 |
| TU476001 | lncRNA | downstream | 213588 | 10632727 ~ 10633580 (+) | False | G414455 |
| TU476003 | lncRNA | downstream | 213588 | 10632727 ~ 10633580 (+) | True | G414455 |
| CI01000300_10401994_10404248.mRNA | mRNA | upstream | 13884 | 10401565 ~ 10404675 (+) | True | CI01000300_10401994_10404248 |
| CI01000300_10387736_10392987.mRNA | mRNA | upstream | 25517 | 10387176 ~ 10393042 (+) | True | CI01000300_10387736_10392987 |
| CI01000300_10357507_10366851.mRNA | mRNA | upstream | 51551 | 10357507 ~ 10367008 (+) | True | CI01000300_10357507_10366851 |
| CI01000300_10167118_10172235.mRNA | mRNA | upstream | 246324 | 10167118 ~ 10172235 (+) | True | CI01000300_10167118_10172235 |
| CI01000300_10094312_10098589.mRNA | mRNA | upstream | 319890 | 10093932 ~ 10098669 (+) | True | CI01000300_10094312_10098589 |
| CI01000300_10445111_10492819.mRNA | mRNA | downstream | 25972 | 10445111 ~ 10493542 (+) | True | CI01000300_10445111_10492819 |
| CI01000300_10496235_10498777.mRNA | mRNA | downstream | 77035 | 10496174 ~ 10498944 (+) | True | CI01000300_10496235_10498777 |
| CI01000300_10604458_10604787.mRNA | mRNA | downstream | 185319 | 10604458 ~ 10605033 (+) | False | CI01000300_10604458_10604787 |
| CI01000300_10661680_10669987.mRNA | mRNA | downstream | 242541 | 10661680 ~ 10671406 (+) | False | CI01000300_10661680_10669987 |
| CI01000300_10675299_10675754.mRNA | mRNA | downstream | 255450 | 10674589 ~ 10676912 (+) | True | CI01000300_10675299_10675754 |
| TU475776 | other | upstream | 44661 | 10369911 ~ 10373898 (+) | True | G414249 |
| TU475774 | other | upstream | 44722 | 10369911 ~ 10373837 (+) | False | G414249 |
| TU474898 | other | upstream | 1469956 | 8944483 ~ 8948603 (+) | True | G413459 |
| TU473010 | other | upstream | 3948854 | 6469245 ~ 6469705 (+) | False | G411777 |
| TU472695 | other | upstream | 4526134 | 5891067 ~ 5892425 (+) | True | CI01000300_05891147_05892754 |
| TU476000 | other | downstream | 180797 | 10599936 ~ 10604363 (+) | True | G414454 |
| TU475996 | other | downstream | 227052 | 10646191 ~ 10663487 (+) | False | G414452 |
| TU476886 | other | downstream | 1284345 | 11703484 ~ 11703623 (+) | True | G415198 |
