RNA id: TU475972


Basic Information

Item Value
RNA id TU475972
length 330
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G414432
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 10428815 ~ 10429144 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGACACTCACAAACACGCATGGAGATTGTGAATGTACATTTATCCTCCAAATATGACTGTGCCAATATGTACCCGTCGCTGTATTTAAAGGTGCATGTATTTATCCCTAGTATATAAGCTTAGCTATGACTGTAGTTGTATCAGTTTTCTTCTAAACGATAAAACTCAAGTATAAACTGTATCTCACCTTTTATGTCTTTGCCATCTGACAAGTTTGGTCTCATTGTAAAGCTTTCGTTATGCTCTAATTGAAAATGTATGTCACATGACTGTAAAATGCATTTTTCTATTTTTAATGGTACTTTGAAGAAAATGTACTCAGATCNNNN

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU475964 lncRNA upstream 9035 10419553 ~ 10419780 (+) True G414424
TU475963 lncRNA upstream 9676 10418559 ~ 10419139 (+) True G414423
TU475965 lncRNA upstream 12407 10416039 ~ 10416408 (+) True G414425
TU475797 lncRNA upstream 17144 10410925 ~ 10411671 (+) True G414270
TU475801 lncRNA upstream 19747 10408783 ~ 10409068 (+) True G414274
TU475986 lncRNA downstream 126144 10555288 ~ 10556419 (+) True G414444
TU476001 lncRNA downstream 203583 10632727 ~ 10633580 (+) False G414455
TU476003 lncRNA downstream 203583 10632727 ~ 10633580 (+) True G414455
TU475997 lncRNA downstream 217047 10646191 ~ 10648902 (+) True G414452
TU476041 lncRNA downstream 271640 10700784 ~ 10701961 (+) True G414488
CI01000300_10401994_10404248.mRNA mRNA upstream 24140 10401565 ~ 10404675 (+) True CI01000300_10401994_10404248
CI01000300_10387736_10392987.mRNA mRNA upstream 35773 10387176 ~ 10393042 (+) True CI01000300_10387736_10392987
CI01000300_10357507_10366851.mRNA mRNA upstream 61807 10357507 ~ 10367008 (+) True CI01000300_10357507_10366851
CI01000300_10167118_10172235.mRNA mRNA upstream 256580 10167118 ~ 10172235 (+) True CI01000300_10167118_10172235
CI01000300_10094312_10098589.mRNA mRNA upstream 330146 10093932 ~ 10098669 (+) True CI01000300_10094312_10098589
CI01000300_10445111_10492819.mRNA mRNA downstream 15967 10445111 ~ 10493542 (+) True CI01000300_10445111_10492819
CI01000300_10496235_10498777.mRNA mRNA downstream 67030 10496174 ~ 10498944 (+) True CI01000300_10496235_10498777
CI01000300_10604458_10604787.mRNA mRNA downstream 175314 10604458 ~ 10605033 (+) False CI01000300_10604458_10604787
CI01000300_10661680_10669987.mRNA mRNA downstream 232536 10661680 ~ 10671406 (+) False CI01000300_10661680_10669987
CI01000300_10675299_10675754.mRNA mRNA downstream 245445 10674589 ~ 10676912 (+) True CI01000300_10675299_10675754
TU475776 other upstream 54917 10369911 ~ 10373898 (+) True G414249
TU475774 other upstream 54978 10369911 ~ 10373837 (+) False G414249
TU474898 other upstream 1480212 8944483 ~ 8948603 (+) True G413459
TU473010 other upstream 3959110 6469245 ~ 6469705 (+) False G411777
TU472695 other upstream 4536390 5891067 ~ 5892425 (+) True CI01000300_05891147_05892754
TU476000 other downstream 170792 10599936 ~ 10604363 (+) True G414454
TU475996 other downstream 217047 10646191 ~ 10663487 (+) False G414452
TU476886 other downstream 1274340 11703484 ~ 11703623 (+) True G415198

Expression Profile