RNA id: TU476498


Basic Information

Item Value
RNA id TU476498
length 239
lncRNA type inter_gene
GC content 0.26
exon number 1
gene id G414872
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 10777866 ~ 10778104 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTTTTTGTCCATGAGGAAAACAGTTTATACAGTTTTTTTATTTTATTTTATTCGCTTTGGTACTATTTTCACAAGTAAGGTGTACATTTTCAAAACTCAGTACTAATATCACAACAGATCATCAAAAGTGCACTTTTTTCAAACATTTCAGCATATTTTCAATTGTTTTAGTACAGTACACAAAAATCACAAAGTATCCTTTTCACAACACAAAATAAGTGTTTCATCTATATAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476488 lncRNA upstream 15865 10761742 ~ 10762001 (+) True G414862
TU476486 lncRNA upstream 17994 10759592 ~ 10759872 (+) True G414860
TU476466 lncRNA upstream 36828 10740737 ~ 10741038 (+) True G414840
TU476049 lncRNA upstream 39146 10733616 ~ 10738720 (+) False G414496
TU476050 lncRNA upstream 39146 10733616 ~ 10738720 (+) True G414496
TU476506 lncRNA downstream 18874 10796978 ~ 10797194 (+) True G414880
TU476507 lncRNA downstream 20601 10798705 ~ 10798925 (+) True G414881
TU476509 lncRNA downstream 21612 10799716 ~ 10799950 (+) True G414883
TU476511 lncRNA downstream 25797 10803901 ~ 10804156 (+) True G414885
TU476572 lncRNA downstream 82835 10860939 ~ 10861213 (+) True G414930
CI01000300_10764813_10766212.mRNA mRNA upstream 11617 10764133 ~ 10766249 (+) True CI01000300_10764813_10766212
CI01000300_10688627_10696530.mRNA mRNA upstream 81336 10688627 ~ 10696530 (+) True CI01000300_10688627_10696530
CI01000300_10682604_10685243.mRNA mRNA upstream 92592 10681317 ~ 10685274 (+) True CI01000300_10682604_10685243
CI01000300_10675299_10675754.mRNA mRNA upstream 100954 10674589 ~ 10676912 (+) True CI01000300_10675299_10675754
CI01000300_10661680_10669987.mRNA mRNA upstream 106460 10661680 ~ 10671406 (+) False CI01000300_10661680_10669987
CI01000300_10854388_10857566.mRNA mRNA downstream 76284 10854388 ~ 10857574 (+) True CI01000300_10854388_10857566
CI01000300_10896258_10905139.mRNA mRNA downstream 118154 10896258 ~ 10905260 (+) True CI01000300_10896258_10905139
CI01000300_10938720_10949086.mRNA mRNA downstream 159610 10937714 ~ 10949231 (+) True CI01000300_10938720_10949086
CI01000300_10955227_10962261.mRNA mRNA downstream 177123 10955227 ~ 10963136 (+) True CI01000300_10955227_10962261
CI01000300_10969048_10992283.mRNA mRNA downstream 190944 10969048 ~ 10993226 (+) True CI01000300_10969048_10992283
TU475996 other upstream 114379 10646191 ~ 10663487 (+) False G414452
TU476000 other upstream 173104 10599936 ~ 10604363 (+) True G414454
TU475776 other upstream 403968 10369911 ~ 10373898 (+) True G414249
TU475774 other upstream 404029 10369911 ~ 10373837 (+) False G414249
TU474898 other upstream 1829263 8944483 ~ 8948603 (+) True G413459
TU476886 other downstream 925380 11703484 ~ 11703623 (+) True G415198

Expression Profile