RNA id: TU477517


Basic Information

Item Value
RNA id TU477517
length 1676
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G415775
representative True

Chromosome Information

Item Value
chromosome id CI01000301
NCBI id null
chromosome length 1891408
location 46371 ~ 48046 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATTTTGAAGTGTCAAAAGGTCATTCGGTTTAACCGTCCAAAGGCCAATACAGCCATTTTATTTGTGATTAAAATATCTTAAAATGTAATAAATGTATATATTTTTTATTCTGGCATGATTTTATAACATCATATATCAACAGTGCAACATGGTATTAAAATTATGTGTAGACGTCGTTGCTTTGTTATGAGAAAGAATGTCCGGAAAAATGAATTTTATTGATGTCATTCGGAGTAACCAATATAAAGGGATCATTTTGGATCAAGTCATGCGGTCAATATCATGTGACAGGATGTGACATCATTCAGACACCTGCAAAGGACCACATGGTCATGAAGCAAAGTAACTAACTCTCTTTTAACTATTTGAAAAATTCATGTTTTCACTTGCTCATACGCATGTCCCGAAACATCAGGTCATTCGGTACAACTGCTATAAAACATGGAAAATGTTGTAATATTTTAAAAACTTGTACTAAATATAAAATGTTTGATTGTCCTTTTGTCAGCTAACTAGCTAGCTAGATATCAGCCTGTTAGCATTATTTGAAAATATTGTCATTTGGTATAACCAAAAGTGTCATTCGGTAAAACCGAAATTTTGGTTAAACAGAATGACTTTTTTGTTGACAAATTTTGTCCATCTTGTAAAAAATGACAAAAGCAGTGTTAATTGATTATAAAAACTACATAATCTTATTGTTAACACTTAATAAAACTTCAAAATTAATTATATCTCCATTATGTTTTTTTACACTTTTAAAAATCTTATTCGTCAATGACCCATATATAACATTTTTGTGCTAACATTTTTAGAATATTATTAAAAAGACTACTTTAAACAAAAGTTCTATTAATGTTACTGGAAGAACATTTGTTAGCTGGGTAGCCTGTAAAAAAGTAACATGTAGTACAATTTAGCACGTTTTAAGTCCTGGAATGGCGTGAACACAGATAGACGGCACAATATGACACATTGCTTTTGTGGTCACTAATATAATTATGAGAAAATAATGAAGACCTGTAAGATTTATTGACTCACTTTTATCCTTGAAGCACTGCATTAATCTGTTTTCCTTTCAGGACAGTTTGTTTCTCGTTCTGCAAACATTAACTTCTCATCAGAGAGGGTGACTAATCTGCTTGAACATTAACTGTGTTTTGAAGATATACCTGACCACTCCTAAACACTGCTTTCATCCTAAACATACTGACCTTTGGATTACAATTACTTTAACTGAGCGAGACAGACTTCCTTTCAAACATCACTGTTTCAACACAAGTGTAGGAGGTCAATCACAACACCATCCCTTGATAAACAGCAGTATGGGGGCAATTATGTACAAAGCATCTAAAAATGATAAATTAATACCTCTGTAGGATACAGATATGTAGGGTTATATAAGATATATAATACTGTAGTTACTACGACAGTAATACTATATGTTATAGATTAGAAAGTTTTGTCAGTCACTAAACTTCACAAGCCATGTACAGTAACCATGTGTCTTACAGTATAATGATCTACTATCTAATGTGCCCACGCTTACCTGAACACACTAATAACAAGTGCTGACATGACATCATATAGTAACAGTGAACGTGTGTGTGACGCACAGAAAGTTATTCATTCAAAACCTCTTTTTCAGAATCAAATTATCAGTGTGCTCTCAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU477516 lncRNA downstream 15 46104 ~ 46356 (-) True G415774
TU477519 lncRNA upstream 4264 52310 ~ 52667 (-) True G415777
TU477522 lncRNA upstream 17154 65200 ~ 65493 (-) True G415780
TU477523 lncRNA upstream 18384 66430 ~ 66779 (-) True G415781
TU478177 lncRNA upstream 351851 399897 ~ 412270 (-) True G416337
TU478289 lncRNA upstream 472343 520389 ~ 520874 (-) True G416423
CI01000301_00010762_00033627.mRNA mRNA downstream 11841 10755 ~ 34530 (-) True CI01000301_00010762_00033627
CI01000301_00000013_00000244.mRNA mRNA downstream 45861 13 ~ 510 (-) True CI01000301_00000013_00000244
CI01000301_00188877_00193996.mRNA mRNA upstream 140125 188171 ~ 193996 (-) True CI01000301_00188877_00193996
CI01000301_00196881_00204784.mRNA mRNA upstream 148835 196881 ~ 205382 (-) True CI01000301_00196881_00204784
CI01000301_00205916_00210613.mRNA mRNA upstream 157276 205322 ~ 211560 (-) True CI01000301_00205916_00210613
CI01000301_00344929_00381428.mRNA mRNA upstream 296883 344929 ~ 381428 (-) True CI01000301_00344929_00381428
CI01000301_00448491_00464517.mRNA mRNA upstream 400184 448230 ~ 464843 (-) True CI01000301_00448491_00464517
TU478235 other upstream 771702 819748 ~ 831202 (-) True G416375
TU478445 other upstream 1005072 1053118 ~ 1054771 (-) True G416547
TU478440 other upstream 1033931 1081977 ~ 1085539 (-) True CI01000301_01082494_01085192
TU478773 other upstream 1724274 1772600 ~ 1772683 (-) True G416827

Expression Profile