RNA id: TU478235


Basic Information

Item Value
RNA id TU478235
length 1315
RNA type TUCP
GC content 0.55
exon number 9
gene id G416375
representative True

Chromosome Information

Item Value
chromosome id CI01000301
NCBI id null
chromosome length 1891408
location 819748 ~ 831202 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAGCTTCATCCTCCAGCTGTCCAGACTCTCAGAATTAATCAGAGCGATGCTTTTGGTGGTATTTATGATGCGGAAATCCTCAGGACAAGATAAACCCTCCTTGGCAGACAACAACAGGAAATTGTGATCACCTCCACTGTGAATTTTACTGACGGTGTAGCGCTCGGCTTTTGTGTATGTATTTCCAATGCACAGGGGTTGGATGTTTCTGACAGGAAGTGGGCTCTTCGCATTTCCTCTGAGGCCTGTGCCCAGCTGGCCCTGAGTGTTGCACCCGAAAGCATAAACCAGGCCCGTAGAGGGCACGAATGCCAGGGTGTGGTGCCGCCCACAAGCGATCTGAGACACCTCAGTGCCCATGAGCTCCATAACTCTGCGTGGAAGAGGCTCGTTGTTGGTGGAATCGTGGCCCAGCTGTCCTCTTGAACCATTTCCAAATGTGAACAGACCCCCTTCCTTTGTCAAGGCAGCGGTGTGTTCCTCTCCACAGCTGATGTACACCACCTTCTGTGACCGCAGGAACTTGATGTGGCAGGGAACAGCCCGGTCTTGCTCATCATTGAGGCCTAGTTGTCCAGCGCCGTTCTTCCCCCAGCCGAACACAGCTCCAGAGAGGGACAAGGCGAAGCTGTGGTCTCCTCCAGCGCTGATCTGAGCCAGTGGGATCCCACACAGAGATTTGAGCGGTTGAGGAGACAGCGTGCTCGGCTCTCCCTTTCCTAAACCCAGCTGACCACTGGAGTTCTCTCCCCATACGAACAACTGACCATCTTTTGAAAGTGCTATACAGTGTTGGTTGCCACACATTACTTGTGAGATTCGATGTTCGCACAACTTTTTAATCAACCTGGGCACGCGAACCACCTCTTCAGCCGTACCCAGACCGAGCTGCCCTCCTTCTCCAGCACCCCAGGCAAACACCTGCCCCTGCTCATTCACCGCCAGAGAGTGAGCCTGACCACATGACACGCCAGCTATCTTCTGAGCATCCAGAGCTCCAACCAGCTCTGGCCTGCATCCTCGCTTATCATGGCCCAGCTGACCGCTGCTGTTGGAGCCACAGGTGTATACGCTCCCATCATGCAACAGGAAGAGCGAGTGCTGGCTGCCACATGCCACTTCTTTAAGACCCCTTCCATCGAACATGCAACAGCTCCTGGGCTCAAAGACAGACGCCTCTGACGCACCGATGCCCAGCTGACCCGAGGCACTGCTTCCCCAGCACAGCATCATGATTCACACATAAAGAGAGAGACAGATGGAAGGATCTGGAATAAGGGAGAGCTCCTAGGCTGTACCGCCTTGCCGTCTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU478230 lncRNA downstream 670 796159 ~ 819078 (-) True G416373
TU478236 lncRNA downstream 2003 800950 ~ 817745 (-) True G416376
TU478240 lncRNA downstream 2691 800139 ~ 817057 (-) False G416376
TU478244 lncRNA downstream 229188 582833 ~ 590560 (-) True G416378
TU478231 lncRNA downstream 246534 533995 ~ 573214 (-) True G416374
TU478266 lncRNA upstream 32877 865271 ~ 867017 (-) True G416400
TU478390 lncRNA upstream 80533 911735 ~ 912460 (-) True G416511
TU478469 lncRNA upstream 159834 991036 ~ 991309 (-) True G416571
TU478473 lncRNA upstream 181988 1013190 ~ 1014387 (-) True G416575
TU478435 lncRNA upstream 188162 1019364 ~ 1022667 (-) False G416539
CI01000301_00759695_00763509.mRNA mRNA downstream 55840 759139 ~ 763908 (-) True CI01000301_00759695_00763509
CI01000301_00723145_00732453.mRNA mRNA downstream 87295 722191 ~ 732453 (-) True CI01000301_00723145_00732453
CI01000301_00687025_00688716.mRNA mRNA downstream 130520 686544 ~ 689228 (-) True CI01000301_00687025_00688716
CI01000301_00643063_00650841.mRNA mRNA downstream 168127 642480 ~ 651621 (-) True CI01000301_00643063_00650841
CI01000301_00614925_00640312.mRNA mRNA downstream 179436 614654 ~ 640312 (-) True CI01000301_00614925_00640312
CI01000301_00851555_00904753.mRNA mRNA upstream 20203 851405 ~ 904753 (-) False CI01000301_00851555_00904753
CI01000301_00910345_00934727.mRNA mRNA upstream 78940 910142 ~ 934794 (-) True CI01000301_00910345_00934727
CI01000301_00942218_00944206.mRNA mRNA upstream 110446 941648 ~ 944418 (-) True CI01000301_00942218_00944206
CI01000301_00981124_00984214.mRNA mRNA upstream 149620 980822 ~ 984612 (-) True CI01000301_00981124_00984214
CI01000301_00985983_00986183.mRNA mRNA upstream 154495 985697 ~ 986637 (-) True CI01000301_00985983_00986183
TU478445 other upstream 221916 1053118 ~ 1054771 (-) True G416547
TU478440 other upstream 250775 1081977 ~ 1085539 (-) True CI01000301_01082494_01085192
TU478773 other upstream 941118 1772600 ~ 1772683 (-) True G416827

Expression Profile