RNA id: CI01000304_00140443_00163606.mRNA


Basic Information

Item Value
RNA id CI01000304_00140443_00163606.mRNA
length 3383
RNA type mRNA
GC content 0.45
exon number 9
gene id CI01000304_00140443_00163606
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 139690 ~ 163683 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTTCTGGACTCCCTTATTTTCATGACATGGTGTCAGAAGTTGTTGACATGAGTGCAGTCTGACCCCTGTCCACAAAATGGCAAAGTTTAATCCTCTGGAGTGGTTTTCTTTCGACAGTCCCTCGGAATGGCCTGAATGGAAACAGCCATTTTGTCGCTTCAGAACAGCAACACAACTAAACAAAGATGACGGCTCAGTACAGGTCAGTTCTCTAGTCTATGCAATGGGAAGTGAGGCAGAGAAGATTTTAGCTTCCTTTAGCTTTGATAATGAGGACAAAGAGAAATTTGATGTTGTACTGGCGAAGTTTGAAGAGTACTTCATACTGAAACGGAATCTAATACATGAGTGTGCATACTTCTATCAGAGAAACCAGCTACTGGAGGAGAAAGCAGTGACATATATTCGCTATGAACTTGCCGCTTATTGTGAGTTCTGTGACAAAAGAGATGAGCACATTTGTGACTGGCCGATGAGCTGTATGGAGAAAGAAGGCATCATTGACAAAGTAACTGAGCTGACGGAGTGGTACACCTTCAAACTTCGGATTACAAGTGCCCAAGTAATCTTTCAAAGGAAAGTGACTGAGACATTACAGGGGATTGAGGGGGTGGAAATTTATATGGATGATGTTCTGGTTTTCACGGGAAAGAACATGATGAACGACTTGAAAGAGTACTGTCATGGAAATGGCCGGACTAAAATTGAACAAACAAAAATGCAGGTTGAAACAAAATCAAATTCTCTTCTTGGCCACATCATCGATGCACAGGGGGTGAGGCTGGACCCTGGAAAAGTCAACAGTATCACTAACTTTTCAGTACCCCAGAACGCACATGAACTAAAACGACCCACAGCAGTTTCTGCAGATGCAAGAAGCTACGGGGTGGGAGGCGTCCTGCTTCAGAAAGGTGATGGTGAGTGGAAACTAGTGGCATACTGTTCAAGGCACGTAAGTGATGATGAAACAAGCCAAGTGATTGAGAAACTCAAAGCCACCTTTGCACATTTTGGGATCACACATGAGTTGAGAAGTGACAAGGCCGACAGTTTTTCTAGTAAAGAATTCAGAGACTTCAGTTCTGAATACGGCTTTGTTCATGTTACTTCAAGCCCACACTTCCCACAGAGCAATGGCCATGCGGCGAGGGCTATACAGGTGGCCAAGAACATTCTGAGACAGAAAGACCCAGTGATGGCTCTCATGTCCACCCAGTCACCGTCCACTGGGTTCAACCCAGCAGAACTACTCATGGGGAGGAGGATTAGAACCACACTCTCTACACTGGAAGAGAACCTAAAACCAGCTTGGCCAGAAGATGAAAAAGGGACCATTCAAGGTTCTTTTTCAACACCAAGGCCTTATGTAGTGAAAATGACGGAAAGAAAGCTGATCAGGAGAAATCGGTGTCACCTTCAGAAGGAGCGCACTCCTTCAGCAACACCCGAATGCACAGTGGTTCCTGAATGCATTGATCTTATGGATTTCGATGGAATAAGTGCACATAAACAGGCACAGGACACACCCACCTTAACACAAACCAGGTATCAGGGCATGCAAAAAGAAAAAAAGATTGCCGCATCTAAAGAGAGTTGTGAGCCAGAGAAGACGAAAAGATCGGAAAGCACGTCAGTGATGAGTCAACCCGAGACGCTGATGAAACTTAAGTCACCACCTCCAGAGCAGGAACAGATTGATCTTATCTGCAAGCATGCACTTGAGCGCCACAGAGTTGCTTTGTATGGCACACAAATTACTTCAGTCATAGACCTCTTGATGTGTGCCCACGAGCTGGACTCCACTCTCGGCCCTGACAGCCATAATGAACCAGTGTTACAGAAAAGCAAAAACATGCGAGAGACTTGTTTCAAATGTTCTGCTCCTGGTTTCACATCTAGAAACTGTCCCAACTGCAACTTTGCGCAACAGACTGTGTCTTTTCCAGCCACTGACAAACAGACAAGTCCAGTTTCGAATGAGCCACAGAACCCTAGGGAGGAGGCTAAAGCCACGACATATGCAGAAATGGAGGAGCAAAAACAAAATTCTGTTCAGCAGCAGGCCATTGACGCAGCGCTGGACACAGGTGCCTCACTTTCGGCAGTTCTTACAAACATGATTTCTGATGTCTTGCAACATTCTCAGAAGGTTCAACCTTGGACTTTTTCCCCAATTCAGCTTGCCAACAGTGCTGTTTGCACTCCGACTGGTATTGTCTGGTTAAACGTTAGCCTCCAGGGTAAAAATTTCTACCATTGTTTTATCCCTGATCTATCCTCTCCACTCATCCTAGGGATGGATTTTATGCTACGAGTGTCGGTTAGCGTTCATATCCCATCAAGGACAGTGACCCTCGGTGAACCCACACCACAAGAGGTTTGGAGTGAGTGGTTGGAAGCACTTGAGCTTGGAAGCTTGATGTTCTTGGATGTCTCCCAGTCTGCCTTGGATGAGAAAGTTGAGATGGCTTGTCTGAAAACGGAACAGAAAGAAGATTTGAGGGACCTTCTTAAAGACTTTTGGAGCTTGTTTGACAGAGACCTAGGGCATACCTCATTGGGCGAGCACGAAATCAACACTGGTGATGCGACCAGTTCACCTCCCACCATACCGGAGCTCACCAGCTAAGAAACAAATAATTGAGGATCAAATTCAGATGATGCTTGAAGAAGACATCATCAAACCCTCTTCCAGTCCATGGGCAGCACCTGTAGTAATTGTCAAAAAGCCATGTGGAGACCACAGGTTTTGCGTAGACTACAGAGGCCTTAATCCTCTGACACACAAGGATTCGTACCAACTGCCCGGAGTCGACGAATCATTGGACTTCCTGGCTCGTGGAAAATTTCTTTCAACTCTTGATTTGGCTCGTAGGTACTGGCAGGTGTCAGTGGAGAAACAGTCAAGACCAAAGACAGCTTTCGCATCACACTGTGGCCTATTTCAATTCAAGGTTCTCCCTTTTGGTCTCTAACGCCTCAGCTACATTTCAGAGGGTAATGAACAATGTCCTCGCTGGCTTGGTCTATAAGTGCTGCGCAGTGTATCTTGACGATATCATCGTTGCATCTCCAACCTTTGAGCAGCACTTGGAAGACCTCTGAGAAGTCCTGTCAAGACTAAAGTCAGCTTGTCTTACTCTCAAGCTGAATAAGTGTCAATTCTGTTTGAGTAAACTCGTCTTTCTAGGATACAGGGTCACTCCGGTTGGTATTTCTCCTGACCCGAAAAAGCAGTCACAGATTTCAGAACGCAGACAGATATGAAACAAGTGAGAGGATTTCTCGGCCTCACAAGCTACTACAGACGGTTCATTCCGAAATATGCAGAGAAAGCCAGGGCTCTATGCTAAATTTTCAATTTTCAAGTGCTCCTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480492 lncRNA downstream 7708 131766 ~ 131982 (-) True G418314
TU480478 lncRNA downstream 93965 45503 ~ 45725 (-) True G418300
TU480472 lncRNA downstream 113446 26033 ~ 26244 (-) True G418295
TU480468 lncRNA upstream 14442 178125 ~ 251292 (-) True G418291
TU480453 lncRNA upstream 121632 285315 ~ 342503 (-) True G418276
TU480448 lncRNA upstream 129223 292906 ~ 306910 (-) True G418271
TU480457 lncRNA upstream 160667 324350 ~ 330891 (-) True G418280
TU480451 lncRNA upstream 183988 352828 ~ 353711 (-) True G418274
CI01000304_00088915_00116828.mRNA mRNA downstream 22862 88164 ~ 116828 (-) True CI01000304_00088915_00116828
CI01000304_00167148_00268194.mRNA mRNA upstream 3465 167148 ~ 268194 (-) True CI01000304_00167148_00268194
CI01000304_00348539_00351333.mRNA mRNA upstream 184812 348495 ~ 351333 (-) False CI01000304_00348539_00351333
CI01000304_00670372_00671143.mRNA mRNA upstream 505593 669276 ~ 671143 (-) True CI01000304_00670372_00671143
CI01000304_00682765_00692613.mRNA mRNA upstream 518826 682509 ~ 692656 (-) True CI01000304_00682765_00692613
CI01000304_00748608_00750261.mRNA mRNA upstream 584632 748315 ~ 751532 (-) True CI01000304_00748608_00750261
TU481692 other upstream 2065701 2229384 ~ 2236106 (-) False G419353
TU481693 other upstream 2065701 2229384 ~ 2236106 (-) False G419353
TU481701 other upstream 2098819 2262502 ~ 2265185 (-) False G419354
TU481700 other upstream 2099055 2262738 ~ 2265340 (-) False G419354
TU481699 other upstream 2099409 2263092 ~ 2265185 (-) False G419354

Expression Profile