RNA id: CI01000304_00308220_00310793.mRNA


Basic Information

Item Value
RNA id CI01000304_00308220_00310793.mRNA
length 1705
RNA type mRNA
GC content 0.46
exon number 2
gene id CI01000304_00308220_00310793
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 307673 ~ 311267 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATAAAAGACAGAATACATTAAATGTTCATTGATTAGGCTATGACGTTGTTTACAGTTTACTGGAGGGACGAGCACGTGCGTACTGATGTTACTTTCAGCGGGTTTTTGTGCAGTTTGAATTTTGTCTCAACTGCACCGTTGAACCTCTGATGACGTTGCCGTTGCTGATTGAGTGTGTGTGGTCACGTGTCGGCGTAGTTCTGATGAGCGGCCATATTAGTTCAGTTCATTCTTTCACGCGACTGTGTTCATAGTAAGACGCGCTCACATAACGTTATATTCATTATTTTATATTTTACAGTGATGTTAATGTAGGGCACTGCAGTGTTTAAAGCAGCTCTAGAGTTACATCCTGTTTGCTCGGAGCGTTTCAATACTTTTCAGTCAGAAGGTAAATCGTTTTTGTTGTGCTCATAATCAGCGTTGATTCAGTTGATCGGATTGTTAGAATTCAAGTTAAATGCTCTTTTGCTCACTGAGCTGAGGAATGACCAGACATTCATAATTAACACTGAATTTTGTTTTACTCAAAATTAAGCTGAAGAATGGCGAGCGCGGCGTGCACTCCGGCCGGACAGCAGTCCTTGTCCCGCGGCAGCAGCAGCACTCCACTGAGCCCCGCGCGGATATCCAGACTGCAGGAGAAGGAGGATCTGCAGCAGCTCAATGACCGGCTGGCTGCTTACATCGACACGGTCCGCAGTCTGGAGTCCGAAAACAGCGTACTGCAGCTACAGATCAGCGAGCGAGAGGAGATACGGAGTCGCGAGCTTACCGGGATCAAATCGCTCTATGAAACCGAGCTGGCGGACGCGCGCAAGGCGCTGGATGACACGGCGCGGGAGCGCGCGAGGTTGCAGATCGAGCTGGGCAAGATTAAGAGCGAGCAAGAGCAGCTACAGTACACACTGAAGCGTCTCATTGGTGTGGAGCAGCTGGAGGATGTGAATGTTCACCAGCTGCTTTACCAGTTTCGGTGTGAAGGGGCTCTTTGTTTCAAATCTTCTCTCTGGACTGAAGCAGATAAGCTAAATGTAGCAAATATTAAAAAGAGTCCAGAGTATTATAAACAGAAACTGACAGCTCACGTCCTCCAGCCGCTCTCTGCTGTGTGTGAGACATTCCTCACATTCCAGCTGCATTCCACAGTTTCTCAGCTCACCTCCAGAGAAGGAGCTCGGCGACTGCTCAGTGCTGCAGGAGTGCATGGCACAGAAAGAAGAGTTTGAAGACCTGTAAACACACATTGTTCATCAAACTTCAGTACGTTCTCTCATTGGATAAATGGTGTTTTTGGTCAGTTGTCATTTAAATAACTTGCTGGTGTTTGAAAGTCAGTTTAAGCTGAGAATATAGTTTTAAATTTCTTGAATGACGTTGATACTGACCCTGTCCTGACTGATAAACTGTGCCTTTGTTCATGACCACTCCTCAAGCTCTAGTTGGCCCACTTTAGACCAAGGTAATCAGCAGGCCATAAAAACTTCTGGCTGTTGGCCCCGAGGAAGTCCCAAAGAGGCACACTCATGGAAACGCACCTGGCCCTTGCATGCTTTTTGGAGCATTGAAATTTATTTCACTGAATGGATATTCAGTCATTTACTCACCTTCATAATCCTGTCCCCCTTTTTTTTAATCGGGATGTGCACGGATACTTGAGTACTCTGACAGCGAAGATCGATCATGAAAACGACTTTAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480174 lncRNA upstream 26647 279893 ~ 281026 (+) True G418023
TU480175 lncRNA upstream 29691 277261 ~ 277982 (+) True G418024
TU480036 lncRNA upstream 39463 168520 ~ 268210 (+) True G417901
TU480128 lncRNA upstream 83754 223015 ~ 223919 (+) True G417984
TU480107 lncRNA upstream 143001 164220 ~ 164672 (+) True G417963
TU480207 lncRNA downstream 129317 440584 ~ 440872 (+) True G418047
TU480212 lncRNA downstream 158948 470215 ~ 470473 (+) False G418050
TU480214 lncRNA downstream 158948 470215 ~ 470572 (+) True G418050
TU480221 lncRNA downstream 167412 478679 ~ 478899 (+) True G418056
TU480155 lncRNA downstream 210417 521684 ~ 526522 (+) True G418004
CI01000304_00292894_00306187.mRNA mRNA upstream 1194 292894 ~ 306479 (+) True CI01000304_00292894_00306187
CI01000304_00047400_00073206.mRNA mRNA upstream 234335 46322 ~ 73338 (+) True CI01000304_00047400_00073206
CI01000304_00315935_00342330.mRNA mRNA downstream 3475 314742 ~ 342523 (+) False CI01000304_00315935_00342330
CI01000304_00370333_00419672.mRNA mRNA downstream 59066 370333 ~ 420755 (+) True CI01000304_00370333_00419672
CI01000304_00424703_00434890.mRNA mRNA downstream 113436 424703 ~ 435066 (+) True CI01000304_00424703_00434890
CI01000304_00453663_00453991.mRNA mRNA downstream 142396 453663 ~ 455240 (+) True CI01000304_00453663_00453991
CI01000304_00480135_00531529.mRNA mRNA downstream 168514 479781 ~ 532037 (+) True CI01000304_00480135_00531529
TU480131 other upstream 79820 226703 ~ 227853 (+) True G417987
TU480224 other downstream 246825 558092 ~ 564451 (+) True G418059
TU480282 other downstream 561403 872670 ~ 875249 (+) True G418116
TU481280 other downstream 1781227 2092494 ~ 2093678 (+) True G418981
TU482914 other downstream 3992069 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 4861956 5173223 ~ 5173339 (+) True G420524

Expression Profile