RNA id: CI01000304_00670372_00671143.mRNA


Basic Information

Item Value
RNA id CI01000304_00670372_00671143.mRNA
length 1815
RNA type mRNA
GC content 0.44
exon number 2
gene id CI01000304_00670372_00671143
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 669276 ~ 671143 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTCACAACCCACAGCCACAGCCTCACAGCACACAGGACAGCTCACAGCCTCTTTCAGAGTTGGAGCCTCTCCCCCTCTCAGGTCGTTTCAAAGGATACTAGGCCTTATGGCCTCTGCATCCCTAGTGCTACAGCTGGGCCTGCTGCGCATGCGGCCTTTACATTACTTCAGAAGGAAGGTCGTCTCAACAGATGCATCTAACACAGGTTGGGGAGCTCTGTGCGAGGACAGACTGGCCTTCAGCTCCTGGTCGGACGAGGAAAGGCGGCTGCACATCAACTGCCTGGAAATGCCGTCAGTTTGTCAAGCTCTTCAGACATTCCTGCCAGTCCTAGAAGGTCACCACGTCCTAGTCCGCTCGGACAGCATGACGGTGATGTCCTATGTAAATCGCCAGGGCACATCTCAACTTGCGTTCGCTGAGGGCAATGAACATGCCGGGCAAACTGAACCAGGAAGCAGACATGCTGTCCCGGAGCAATGTCTCTGCAGAGGAGTGGATGCTCCATCCTCAGACGGTTTAGAGAATTTGGGAGATCTTCGGGAAGGCAGAGGTCGACCTCTTTGCCTCAGAACACTGCCCAACCTATTTTTCGAAGGGCAGAGATGTGCTGGCCCACGACTGGCCCAGCATCCTCCTTTATGCCTTTCCCTTGATCACTCTGATCCCTCAGGTCATCAGATGAATCAGGGAACACAAACACAAGGGTTCTCTTAGTGGCCCCACTCTGGAGGAACCAACCTTGGTTCTCGGAGCTATCTCAGTTGCTCACAGCAGCCCGTGACCCATTGAGTACTGTGTCGCGGGTCATGCTATGTCGCTGCACGACTCAGTGTTGTCGCTTCAGTCGAATTAACCTGAGGATCCTATGCCAGAATGCCCACTTATATAGCCAGACGACCCTGCCCATTTCGGCAGGCTCTGGCAGGCTTCATCGCCATAGGCTCGTGCAGCTCTGCTGCCTCGCCATTGCAGGCAGATCAAAAACATTGTTGAATATCAAGTACTTGATATGTTGCAATGGAACATTCTATTGGCTTTCACTTCTTGTCAGTTTAAGTTCTTTGCTTCACCTGAAATGTAGGCGAGAGTAGGCGGCTGGAGTGAGGGGAGGAGTGAAAAAGTGCTGGGAAGTCATACAGTTCTCTCTTCTCGTAGTAGTGGATCATACAATTACGAGATCAAAGGCGGATATCGCAAGATTCACACTCATGCCCTTTGTTGCTGATAAACTGGATGTAATTTAAGTTCTGTTGCTTTTATATGAAAATAAATATAATGAACAAGACACCCAACGTACTTGTTATTTTATTCAATTTGAAAGATGTGTTTATCAATCATTTTTAATACAGACATGTTTTTATATATTTTTTATAAATATGACAACAATCACATAACCCATAGAGATTGGACTGTCAGAGACTTTGGGAATATTCACACTTAATTTTTTTTTCACATGACATCAAAGTTTTAAAAACATTTTAAAAGAGAAACATTTTAAACGTGAACAATACATCACGGCTGTTTTTTTTTTTTTTTTTTTTTTTTTTCAATTACTATTATATTGCAAGAAAAGAAACAGCACTGCATTAAATACATTAACAAATGAAAGAAAGAGGGGAAAAAAAAAAAAAAGGTACAGACAAATAACAATGGCACCTCAACCAGTAAGGAAAATATGGTCATAGTTCTTAAGAAACTTGTTGTTCTTATTGTTATCAATGAGTTTAAGAGATTTTACAATAAGTGAAATCTCAGCGATGAAGACATCAAATGTTGGCAAAGTCTTGAGAAATGTGTTTTTGTGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480688 lncRNA downstream 409 668572 ~ 668867 (-) True G418492
TU480685 lncRNA downstream 4939 664052 ~ 664337 (-) True G418489
TU480675 lncRNA downstream 20592 648408 ~ 648684 (-) True G418479
TU480673 lncRNA downstream 22666 646306 ~ 646610 (-) True G418477
TU480667 lncRNA downstream 30964 638075 ~ 638312 (-) True G418471
TU480691 lncRNA upstream 4399 675542 ~ 675887 (-) True G418494
TU480617 lncRNA upstream 24514 695657 ~ 697197 (-) True G418424
TU480615 lncRNA upstream 55866 727009 ~ 727304 (-) True G418423
TU480703 lncRNA upstream 65726 736869 ~ 737072 (-) True G418499
TU480766 lncRNA upstream 157371 828514 ~ 828843 (-) True G418556
CI01000304_00348539_00351333.mRNA mRNA downstream 317943 348495 ~ 351333 (-) False CI01000304_00348539_00351333
CI01000304_00167148_00268194.mRNA mRNA downstream 401082 167148 ~ 268194 (-) True CI01000304_00167148_00268194
CI01000304_00140443_00163606.mRNA mRNA downstream 505593 139690 ~ 163683 (-) True CI01000304_00140443_00163606
CI01000304_00088915_00116828.mRNA mRNA downstream 552448 88164 ~ 116828 (-) True CI01000304_00088915_00116828
CI01000304_00682765_00692613.mRNA mRNA upstream 11366 682509 ~ 692656 (-) True CI01000304_00682765_00692613
CI01000304_00748608_00750261.mRNA mRNA upstream 77172 748315 ~ 751532 (-) True CI01000304_00748608_00750261
CI01000304_00843412_00844705.mRNA mRNA upstream 172152 843295 ~ 844705 (-) True CI01000304_00843412_00844705
CI01000304_00852998_00861119.mRNA mRNA upstream 181803 852946 ~ 861367 (-) True CI01000304_00852998_00861119
CI01000304_00862451_00870277.mRNA mRNA upstream 191010 862153 ~ 872429 (-) True CI01000304_00862451_00870277
TU481692 other upstream 1558241 2229384 ~ 2236106 (-) False G419353
TU481693 other upstream 1558241 2229384 ~ 2236106 (-) False G419353
TU481701 other upstream 1591359 2262502 ~ 2265185 (-) False G419354
TU481700 other upstream 1591595 2262738 ~ 2265340 (-) False G419354
TU481699 other upstream 1591949 2263092 ~ 2265185 (-) False G419354

Expression Profile