RNA id: CI01000304_00748608_00750261.mRNA


Basic Information

Item Value
RNA id CI01000304_00748608_00750261.mRNA
length 2542
RNA type mRNA
GC content 0.41
exon number 5
gene id CI01000304_00748608_00750261
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 748315 ~ 751532 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGGCCGGCACCACGAGGGGGCAAAACGGGGCATTACCCCTCAGATCTGATTTGTGCCCTCTCACTTTCAATTTGTTCCCCTCCACCCCTGAAACAGGATTGATTTTAACCCTTTGATGCATACGATAACACCGGTGTGGTTAGAATGTTCAGTGCATCACTGCTAAATTCAAAAGTGCTTTTGCGCTTTGGCTGGCACTGAACCAGAGACAGACGTGCTCAGTGCTTTTCACAACTATTCAGTGTTTTCAACCACATAATGTTTATTTGATGTTTCAGACATTTAAATAGACATTTAAATGAAGTACTATATAAAAAAGACATTTATAGTTTGTTAAATTCAAATTCCACACACTGATGTCTATGTAAGCTGCAATAATATTCCTTTCAGTTATAATTTGACGAAGTGTTTTATTCATATCAGATATACATTGTATATGAAACAATAAAGTTTACATTTCTCCCAGTTCACCGGCCACTTACTCTTATGTATTTCAGGAAAAATGCTGAATTTACATGATGTAAATCTGACAGTTCCTCTGAATTACAGTGCAAACTCATCAAACATTATATCAACTAACATGATTATTAAAAGTGTTTAAATGACAAAATACGTTTACTTCCACATATTTGACAATCAGAATATAACATATTATTATATTAATCAATATATCATATAATTCATGATATATTAACAAGTTTGTGAATATTTTGATTAAAAAGGGAAAAACAAAATAAATGTGATACATATCTGTCATAGTGTGGCTGCATGACACGTAGCCAAGGAATTAATATGTAATGGTCGCCTTAAAAAACCCACGCTGGGGGCTCAGCTAGAATATAGAGCGCCTAGATTAGAAAATAGATACCCCAACAGCAAATGAGAACATCACTAAGCCCGGAAGAGTATAATCGGAAGTAAACATGCACATAGGGTGCTTCTCAATACTCAAATTGATACTTCCTCGTTTTCTTCCGTCCTCCAGCCCGTGACCCGGAAACCAATATAATTCAGCCATCTTGAAGGACATTTCAATTCTCTAATTGCACCTGGATTCTCATAACTGCACATTGCTTCTGTGAACTACAAGTTAGACAAATTATTAGAGCTGCGACTAACTACTTTTTTCCTGAATCAGTTTATCAGATACAAACAAGTCATTTTCAGGAATTTGTTGAAAACTGAATTGGTTTCTGATCTGAAATCAGAGACATTTCTAATAGTTTGCTATTCATTGTTCTTTATTTTAGAAAAAGCTGAAAAATGAAGAATGAGAAAAGCAGTCCGTGCCTTCTTCCAGACGGCATGTGAGACTGTAAAGCATCGCTTCCCCTGCCACGACTCTGACAAAATCCAGCCTCCTACACCTGATCCGGATCTAGATAATTCTGAGACAATGTGTCTGTCGGACCAGGTCTGTCCAGATCTTGAGCCATCACCTGTTGAAGAAAGTCCCTCCAAGATTGAGCAAGCGGCTGATGACTCCGATGTAGCCGGTTCAGTGTCGTCACTTGTGCCAGAAACACCTGAAGAAGAGTCGTCAGATCCAGAAACCCAACTGCCTCAAGGATCTGTTGCGTCTTTGTTTGAAGTGAGACATCTGATCACATCAGGAGAATTCAGAAAGCCTGGTCATTCCAAACCTGTGCTTGAAGAAGTCACACTTATGCTTTGGTTGGAACAAGCTCCCTCATACCCCAACATCAAATTACACCACTGGATTCAGGATGAGAGCAGCTTCATGCTCATTACGGAGAAACCTGAACTATGCAGGTGCTTGGAGGATTACATCTTGATGTCAGATGACATCACTGAAAGAAAAGCACGCTGGTTAATGTTTAAGGCAGTTCAAGCAGTCAAACACTGCCATGAATGTGAAGTTTTCTATGGTGATATCCAGGCAGGTAACATCCTGGTGAATCTCCACAGTCTGGAGCTCAAGTTAATTTATTTCCGCTGTGCTCGTATCATCGGTACTGAGGCCTTTAACAGCAGTGAATATCAAGATGAGTTGGATCAGACTTGTATACCCCACTTGAGGTCGGTCATAAAGCACACAGTATTCCACGCTGGCCCAGCACATGTCTGGGCACTCAGAGTATTGCTCTTTGAAATTATGCACGGATATTTGCCCTTTGAAAGCTTCGACGCAATAGTGTGTAGCTACATTGACATGGATCCGGCCATATCCACAGCTCACCGGCTGACACTAGAGCATCTGGAAGAGCACCGGTGGATAAAAGCCTAGATTGTTAGAAGGCAGGGGCTTCTGGGCATCAGTCAAATGAGAGGAGAGGTAGGGAACTACATTACATCCACTGTCAGAAGAGCATTATGAATGAAAGCAATCAAGGGACAGCTCTACATATAGCCATTAAGAAAAAGACAACAAGGCTCAAGACCTCATACTTTCAGGACAGATGCATCCATTCAGCTGGTGCATCTTCCAAGAGAGTATGTGACCTGCATCCTGCCAGAGACATTTTGAGCCGCAAATAACTTTGGAGATGCAGGAAAAATGACAGCTTGATACTGATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480703 lncRNA downstream 11243 736869 ~ 737072 (-) True G418499
TU480615 lncRNA downstream 21011 727009 ~ 727304 (-) True G418423
TU480617 lncRNA downstream 51118 695657 ~ 697197 (-) True G418424
TU480691 lncRNA downstream 72428 675542 ~ 675887 (-) True G418494
TU480688 lncRNA downstream 79448 668572 ~ 668867 (-) True G418492
TU480766 lncRNA upstream 76982 828514 ~ 828843 (-) True G418556
TU480768 lncRNA upstream 82414 833946 ~ 834162 (-) True G418558
TU480773 lncRNA upstream 87324 838856 ~ 839357 (-) True G418563
TU480739 lncRNA upstream 121140 872672 ~ 875306 (-) True G418530
TU480778 lncRNA upstream 134274 885806 ~ 889909 (-) True G418567
CI01000304_00682765_00692613.mRNA mRNA downstream 55659 682509 ~ 692656 (-) True CI01000304_00682765_00692613
CI01000304_00670372_00671143.mRNA mRNA downstream 77172 669276 ~ 671143 (-) True CI01000304_00670372_00671143
CI01000304_00348539_00351333.mRNA mRNA downstream 396982 348495 ~ 351333 (-) False CI01000304_00348539_00351333
CI01000304_00167148_00268194.mRNA mRNA downstream 480121 167148 ~ 268194 (-) True CI01000304_00167148_00268194
CI01000304_00140443_00163606.mRNA mRNA downstream 584632 139690 ~ 163683 (-) True CI01000304_00140443_00163606
CI01000304_00843412_00844705.mRNA mRNA upstream 91763 843295 ~ 844705 (-) True CI01000304_00843412_00844705
CI01000304_00852998_00861119.mRNA mRNA upstream 101414 852946 ~ 861367 (-) True CI01000304_00852998_00861119
CI01000304_00862451_00870277.mRNA mRNA upstream 110621 862153 ~ 872429 (-) True CI01000304_00862451_00870277
CI01000304_00877256_00878179.mRNA mRNA upstream 124602 876134 ~ 878179 (-) True CI01000304_00877256_00878179
CI01000304_01030191_01033191.mRNA mRNA upstream 277640 1029172 ~ 1033191 (-) True CI01000304_01030191_01033191
TU481692 other upstream 1477852 2229384 ~ 2236106 (-) False G419353
TU481693 other upstream 1477852 2229384 ~ 2236106 (-) False G419353
TU481701 other upstream 1510970 2262502 ~ 2265185 (-) False G419354
TU481700 other upstream 1511206 2262738 ~ 2265340 (-) False G419354
TU481699 other upstream 1511560 2263092 ~ 2265185 (-) False G419354

Expression Profile