RNA id: CI01000304_00846138_00850133.mRNA



Basic Information


Item Value
RNA id CI01000304_00846138_00850133.mRNA
length 922
RNA type mRNA
GC content 0.45
exon number 5
gene id CI01000304_00846138_00850133
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 846059 ~ 850379 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTTTAAAAGCAAATAAATGTTCCACTGTAGGTCAGTAAATATGTTCTGAATATATTCTAAATATGTTGTTTCTCATATCATGAAGACGTCTGACTATGCTGAAAGCGTGTTAAAGCCGAGACAGAACTCGTTGCTCCAGCAGAAAATTGAGCGACACCATCGCATGACAGGAGAGACCTGGAAACTCAGCCAAGGGTTAACAGTCGGGGTGAGCAAACTCATCCACATATCACTAGTGTCACATGCTGCAGGACAGGGGGAAGAGGATCAGATGTGTCTTGATGTCAATGTAGACGAGAATCCTAATCAGGGAGCCAGGAGGAGACGGAAGCTGCTGCAGACTGTTACTCGAGATCCTGTCCAAAAGGAAGCACCCAAGCAGAAGAAGGTCATAGTTTTGCCCGATGAGCCGTCAGAAGACACCGAGGGGGTTGTAAAAATAGCTCTAAGATGTCCAACCAGAAGAACGATCCACCGGCGATTCCTCAAAACCTGGAGCTCGATGCTCCTCCTTGACTGGATGATGAAGACAGGATACCATCCTGCTCTCTACACGCTGTGTACATCCTACCCCAGGAAAACCCTGCTGATGGCTGCAGACGTGAGCCTGGAGGAGGCTGGGATTCTCACTGACACACTGCTGCACGTGGAGGAGAAAGAGCTGTCCGTTACCTAAGAGCACTTCTGTTTTTGAAATGCTTTAATGGGACTGAATGGATATCAGTATCAGTGCTGTAACATCGTGCACCAATCAAAAGGACAGAATTGGGATACATTCATTGTAACTCTTCACTTTTGCTCTTCAACTGGCATATGGATGAATCTTACAGCCTGTATGCTGATCTTAGTTTTTCTATAAATACATGAGAATAATCCTGTTCAGATACAATGTTTTTTAAATCAGCAAAAAAAAGTAATGGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU480324 lncRNA upstream 152456 693350 ~ 693603 (+) True G418156
TU480317 lncRNA upstream 178576 666617 ~ 667483 (+) True G418149
TU480316 lncRNA upstream 181442 664260 ~ 664617 (+) True G418148
TU480313 lncRNA upstream 192156 653652 ~ 653903 (+) True G418145
TU480308 lncRNA upstream 201498 644260 ~ 644561 (+) True G418142
TU480349 lncRNA downstream 76126 926505 ~ 926772 (+) True G418180
TU480366 lncRNA downstream 194537 1044916 ~ 1045411 (+) True G418192
TU480369 lncRNA downstream 197019 1047398 ~ 1047599 (+) True G418195
TU480370 lncRNA downstream 197879 1048258 ~ 1048495 (+) True G418196
TU480371 lncRNA downstream 199240 1049619 ~ 1049865 (+) True G418197
CI01000304_00772995_00827316.mRNA mRNA upstream 18451 771033 ~ 827608 (+) True CI01000304_00772995_00827316
CI01000304_00757894_00760456.mRNA mRNA upstream 85399 757894 ~ 760660 (+) True CI01000304_00757894_00760456
CI01000304_00728178_00731945.mRNA mRNA upstream 113785 727956 ~ 732274 (+) True CI01000304_00728178_00731945
CI01000304_00695426_00725459.mRNA mRNA upstream 120600 694461 ~ 725459 (+) True CI01000304_00695426_00725459
CI01000304_00480135_00531529.mRNA mRNA upstream 314022 479781 ~ 532037 (+) True CI01000304_00480135_00531529
CI01000304_00884782_00917034.mRNA mRNA downstream 34111 884490 ~ 917034 (+) True CI01000304_00884782_00917034
CI01000304_00933179_00942864.mRNA mRNA downstream 81419 931798 ~ 943865 (+) True CI01000304_00933179_00942864
CI01000304_00962923_00975418.mRNA mRNA downstream 112374 962753 ~ 975644 (+) True CI01000304_00962923_00975418
CI01000304_00983004_01018406.mRNA mRNA downstream 132533 982912 ~ 1018693 (+) True CI01000304_00983004_01018406
CI01000304_01173248_01184405.mRNA mRNA downstream 321758 1172137 ~ 1184529 (+) True CI01000304_01173248_01184405
TU480224 other upstream 281608 558092 ~ 564451 (+) True G418059
TU480131 other upstream 618206 226703 ~ 227853 (+) True G417987
TU480282 other downstream 22291 872670 ~ 875249 (+) True G418116
TU481280 other downstream 1242115 2092494 ~ 2093678 (+) True G418981
TU482914 other downstream 3452957 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 4322844 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 5390854 6241233 ~ 6242997 (+) True G421162

Expression Profile