RNA id: CI01000304_00852998_00861119.mRNA


Basic Information

Item Value
RNA id CI01000304_00852998_00861119.mRNA
length 1110
RNA type mRNA
GC content 0.50
exon number 7
gene id CI01000304_00852998_00861119
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 852946 ~ 861367 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATAAAAAAAAAACACCCGTGACACGGCATTTGGCGTTTAATGAGCTGATATCCGAGTTGAACAGCAGTGTTTGGTGTTTGTGCTTCGCGTCGGCCCAGCGCAGCGCGTGAGTGTGGCAGTGGTACATTAAACTGGAGTTCAGTGCGCGCGCACTCACTGCTGATTTAATTACCGAAGAATCCGTGAGAACTACCGCAGAATCGCGCAGGTGATGGATGATAAAACGTTCACGAAAGAATTAGACCAATGGGTCGAACAGCTGAACGAGTGCAAACAGCTGACCGAGAACCAAGTGAGAACACTCTGCGAGAAGCTCTTCAGGAAGAGCTGAGAAATGCTTTTTTCATTGAGCCAGCTAAAGAGATTCTCACTAAGGAGTCCAATGTGCAGGAGGTGCGCTGCCCCGTCACAGTGTGTGGAGATGTGCATGGCCAGTTTCATGACCTGATGGAGCTCTTCAGAATTGGTGGGAAGTCACCTGACACCAACTACCTGTTTATGGGCGACTATGTAGACAGAGGATATTACTCAGTGGAAACAGTCACACTTCTTGTTGCACTAAAGGTTCGCTATCCCGAACGCATCACGATATTGCGAGGAAACCACGAGAGCAGACAGATCACACAGGTGTACGGTTTCTATGACGAGTGCTTGAGGAAATACGGCAACGCAAACGTCTGGAAGTATTTCACAGACCTCTTTGACTACCTACCCCTCACAGCCCTGGTGGATGGGCAGATCTTCTGCCTGCACGGTGGTCTCTCTCCATCCATTGACACACTGGATCACATTCGTGCACTGGATCGTCTGCAGGAGGTGCCACATGAGGGACCCATGTGTGACCTGCTGTGGTCAGACCCTGATGATCGTGGTGGCTGGGGAATCTCGCCACGAGGAGCTGGTTACACCTTTGGACAGGACATTTCTGAGACCTTCAACCACGCTAATGGCCTCACGCTGGTGTCCCGTGCACATCAGCTGGTCATGGAGTGCGCCAAACTACTGCTATCGCTGTGGCAACCAGGCAGCCATTATGGAACTGGACGATACCCTTAAATATTCATTGTAAGTTACACTTATTATGATCTTTCTCATATACACTTATAAA

Function

GO:

id name namespace
GO:0008022 protein C-terminus binding molecular_function

KEGG:

id description
K08824 CDKL; cyclin-dependent kinase-like

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480773 lncRNA downstream 13589 838856 ~ 839357 (-) True G418563
TU480768 lncRNA downstream 18784 833946 ~ 834162 (-) True G418558
TU480766 lncRNA downstream 24103 828514 ~ 828843 (-) True G418556
TU480703 lncRNA downstream 115874 736869 ~ 737072 (-) True G418499
TU480615 lncRNA downstream 125642 727009 ~ 727304 (-) True G418423
TU480739 lncRNA upstream 11305 872672 ~ 875306 (-) True G418530
TU480778 lncRNA upstream 24439 885806 ~ 889909 (-) True G418567
TU480785 lncRNA upstream 41475 902842 ~ 905854 (-) False G418573
TU480786 lncRNA upstream 43543 904910 ~ 905854 (-) True G418573
TU480793 lncRNA upstream 48273 909640 ~ 916578 (-) False G418576
CI01000304_00843412_00844705.mRNA mRNA downstream 8241 843295 ~ 844705 (-) True CI01000304_00843412_00844705
CI01000304_00748608_00750261.mRNA mRNA downstream 101414 748315 ~ 751532 (-) True CI01000304_00748608_00750261
CI01000304_00682765_00692613.mRNA mRNA downstream 160290 682509 ~ 692656 (-) True CI01000304_00682765_00692613
CI01000304_00670372_00671143.mRNA mRNA downstream 181803 669276 ~ 671143 (-) True CI01000304_00670372_00671143
CI01000304_00348539_00351333.mRNA mRNA downstream 501613 348495 ~ 351333 (-) False CI01000304_00348539_00351333
CI01000304_00862451_00870277.mRNA mRNA upstream 786 862153 ~ 872429 (-) True CI01000304_00862451_00870277
CI01000304_00877256_00878179.mRNA mRNA upstream 14767 876134 ~ 878179 (-) True CI01000304_00877256_00878179
CI01000304_01030191_01033191.mRNA mRNA upstream 167805 1029172 ~ 1033191 (-) True CI01000304_01030191_01033191
CI01000304_01054942_01133130.mRNA mRNA upstream 193575 1054942 ~ 1133130 (-) True CI01000304_01054942_01133130
CI01000304_01186035_01200177.mRNA mRNA upstream 324494 1185861 ~ 1200808 (-) True CI01000304_01186035_01200177
TU481692 other upstream 1368017 2229384 ~ 2236106 (-) False G419353
TU481693 other upstream 1368017 2229384 ~ 2236106 (-) False G419353
TU481701 other upstream 1401135 2262502 ~ 2265185 (-) False G419354
TU481700 other upstream 1401371 2262738 ~ 2265340 (-) False G419354
TU481699 other upstream 1401725 2263092 ~ 2265185 (-) False G419354

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00003742 False 738 mRNA 0.51 5 NC_007121.7 7593196 ~ 7607227 (+)
bowfin (Amia calva) AMCG00010653 True 1074 mRNA 0.59 7 CM030129.1 38325685 ~ 38339014 (+)
mexican tetra (Astyanax mexicanus) TU242057 False 2073 lncRNA 0.50 7 NC_035916.1 23503354 ~ 23514708 (-)