RNA id: CI01000304_00933179_00942864.mRNA


Basic Information

Item Value
RNA id CI01000304_00933179_00942864.mRNA
length 3009
RNA type mRNA
GC content 0.40
exon number 3
gene id CI01000304_00933179_00942864
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 931798 ~ 943865 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTAAATAACCTACAGTCTAAGTTGACTCCACCAATGGAAGTAACATTTTGGAAGCAATTTTATTTATTTATTTTTTGGGGGGTTATTTCAGATTATTAATTGGCTCCACTGGGCTGGTTTTCTCCTCTGTTGTGCTTGTTCTTTTTTGTTTTGTTTTTCTTTTGAAAAGCCTTTTGAAATAGTTCCTTTTAATTGAGGCAAGGCTATTCCTGCTAAGGTCAGTGTTACATTGACCAAACTCAATCTTACTTGACATCACATGGCCAAGCAATGACTTTTAGATCATTAAGTGTCATACCATGAATTGCGGTGTACCTTTACAGGTATTTTTTGTTCTGTGTATATTTGTCTGTGTGATTGTATTAATTTGTCATGTAAAATACAAAAAGAGGGCACCAATTAAGAGCATTTTGTACGGCTGTGGGCACGACTGAGAAAGGCCATTCTAAACAGCTTTTAAAGTTTTGACATCAAGTTTGTGTAATTCAGAATTTTCTCTTTGGAGTTTGGAAGCTCACCAGGCAGGGCCAGCTGGAGTTTACAAGATAATCTAGGATCAGACAAGCTGGACAAATCCAAATACATTTTCCAGTGGGTTTTTCCATCTCAACATAGAGGAGATTGGGGTAAGTTGTTAAATCGGAAAGTTGTTTCAAAGTAGGCCTATATAAGACAAGTTTTGAGTCTAAAGTCCAATTACACAAATGCTTGTTTTCTCTTTTACATTAAGATCAGTTTGTCCCCCAAAGCTAAAATTTAAACGTCTGTTAACAAGTGGCTAAACACAGTAAAACACACTGACAACATTAAGACAAGAGTCTATTATAATGGAGATTTTTAACTAAAGGCACTACCACATATTAACATTTGAACTGTTTTCTCAGCTCGAGAATTTTTCATAAATATCAGATCACGTTTACCCATAGGCCTATGTTATACATTTCATATAAATTCATTAAAGTTTCAGTTTGCTAAATTTTTTTTGTTTTTTTTTGGCTTGTTTCATTCATTTTAAAGCGGTTTCTATTTTGCCTTTAAATAAAATAAACAACTTTAAATAGCCTATTTTAATTTTAATAAAACTTTTAAATACAGATATGTTGTGGAAGATTACTTTTTATTTATTTTTCACAGAATTTCATATTTAATATATTTTCAAATCCCTTGCCACTATTTATTTAGGAAATTATGTCCGTAATTCCACACACGACGCGACAAATCGCGCTGTCCTTTGTCGCGTCGCTCGCGGTGGGGAAATCCTCACCCCGCCTCCTGTAATACGATCAGCCGAAGAGCCAACAGAAACCACGCGTCTCTTCATTCACTTCTTCTGCTTCACTTAATTCATCCATTTGAACACAAGGAACGCGCGTGCGGGGATGTGGTGGATTCAGTCAGGTCGCAGTTCTTTCGCGGTCTCCGCTCTCTGTGGAGTGGCTGTATGTTTGTCCCTGTGGACGCGTGTGGTCCGGTGTGGGAGCTTCGCTTGTTCGCCGCCTGCGGCGTCAGTGCAGGAGCTCGCGCGCCGCTCGGGGGTCGTGTTTGAAGGGAAGCTTCAGGAGGAAAAGCGAGCAGAGCAGAACTGGACTGAAGCGCAGGGTGAGTCGCCGGTGAACGCGTCGCGTCAGGTGCGAGTACGAGTGCAGCAGGTGTGGCAGCTGAAGGCAGGAGGGCTGCTCAAGGACTCTGTGGTGTCTCTCATCTGGTTTGAAGGTGGCAGATGTTTCCAGCTCAACACCGGGATCCGGTACATGTTCTTCATGGAAGCCACTAATGACACGTCTGTGTTCACGGCAGTTTTCCCGCCGGTGGAGACCAAGCGCACCGTGAGGAAGGATGTGAGTCAAGTGCTCTGTCAGGACTGCGCAAAATATGGTGACGACTGGCTGGGTTTCAAAACGTTTGACAGACACCTCTTCCTATCACACAAAACCAACAAAATCAAATATTTAAGACTTTTGTTACATGTTGGTACTTACCAGGTGCAGATGCAGAGATTTTACTGAGACATTCTTAACTTTGTCTGTAAATACATAGAAATTTAGCTTTCTGCAAACTCTTATAATTTAATATCTTATATTTTTTATGTGTAATGTTAGAAAATGAATGACAAATATTTTACATTGGAGTGTTACATGTAGAATCTATGAGCCACGTGCTGATCTACAGTTTCATCCCTGATTAGAGCTGTTAGAAGTACATACGCGACACACACCTGTCCTGCTCTGGCGTGTGCCCACTAAATACCTTCCTAAACACATTTCCTCAGCTGCTGAAGACAACTGCAGATCAGGCTTCCTCTCGCAGCTCCCATTTTACAGGATCATAAGAAGTCCATTGTTGCAGCCATGTTCAAATTTCAGGGGTTTATGCTCTGAAATTCCTGTCGTAAAAAAATGCCAAGACATTCAGCAGTTGATTTATCCTGGATTTGTCTTGCCTGCAGTAAATTATATCCATTCTGATAGAGCTTTTGACAAAATGCATTTTGAAATAATACATTGGGAAAAAGAGGAGAGAGATCTGTTGCTTTCTTTTCTAAGATGACAAAAAGAATCTGTTGATGATTAAGAAGTTTTAAGCCACAATGATTTTTCAAAGGAATGGATTTAATTAGCCTGGCATTCATTACCATAGCAGGGTTTATCCAGCATTGGCCCTTGGCCTTATTTTGTCCACGTTTGTGCCAGCTTGAGGTGGGTAGAGTAGCCAAAAACTTACACAAGTAAAATCACTCAAATGACCTTTAGCAGTTTTTTTCATGTTTTTGTTGTGTAAGGGAATGGTTTTGGCTGTGTTTCTGTGCATTGAAATGAGCTGTGTTGTGGAGATTATTTTAATTGTTTCAAGGATGGAGACTGGTGTGTCTCCAGCCAGGTTATGAAAAAAAATCAGCAATGAGCACACCACTTACAGCATGAGAGTGTCAAACTGCTAATGGACTGATCTGTATGTTGTCTTCATTGTTTTCAGTTAATAATATTTGTTTTTTTTTCTGACAGTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480349 lncRNA upstream 5026 926505 ~ 926772 (+) True G418180
TU480324 lncRNA upstream 238195 693350 ~ 693603 (+) True G418156
TU480317 lncRNA upstream 264315 666617 ~ 667483 (+) True G418149
TU480316 lncRNA upstream 267181 664260 ~ 664617 (+) True G418148
TU480313 lncRNA upstream 277895 653652 ~ 653903 (+) True G418145
TU480366 lncRNA downstream 101051 1044916 ~ 1045411 (+) True G418192
TU480369 lncRNA downstream 103533 1047398 ~ 1047599 (+) True G418195
TU480370 lncRNA downstream 104393 1048258 ~ 1048495 (+) True G418196
TU480371 lncRNA downstream 105754 1049619 ~ 1049865 (+) True G418197
TU480372 lncRNA downstream 107201 1051066 ~ 1051348 (+) True G418198
CI01000304_00884782_00917034.mRNA mRNA upstream 14764 884490 ~ 917034 (+) True CI01000304_00884782_00917034
CI01000304_00846138_00850133.mRNA mRNA upstream 81419 846059 ~ 850379 (+) True CI01000304_00846138_00850133
CI01000304_00772995_00827316.mRNA mRNA upstream 104190 771033 ~ 827608 (+) True CI01000304_00772995_00827316
CI01000304_00757894_00760456.mRNA mRNA upstream 171138 757894 ~ 760660 (+) True CI01000304_00757894_00760456
CI01000304_00728178_00731945.mRNA mRNA upstream 199524 727956 ~ 732274 (+) True CI01000304_00728178_00731945
CI01000304_00962923_00975418.mRNA mRNA downstream 18888 962753 ~ 975644 (+) True CI01000304_00962923_00975418
CI01000304_00983004_01018406.mRNA mRNA downstream 39047 982912 ~ 1018693 (+) True CI01000304_00983004_01018406
CI01000304_01173248_01184405.mRNA mRNA downstream 228272 1172137 ~ 1184529 (+) True CI01000304_01173248_01184405
CI01000304_01269500_01313976.mRNA mRNA downstream 324158 1268023 ~ 1314632 (+) True CI01000304_01269500_01313976
CI01000304_01323957_01324596.mRNA mRNA downstream 380092 1323957 ~ 1326322 (+) True CI01000304_01323957_01324596
TU480282 other upstream 56549 872670 ~ 875249 (+) True G418116
TU480224 other upstream 367347 558092 ~ 564451 (+) True G418059
TU480131 other upstream 703945 226703 ~ 227853 (+) True G417987
TU481280 other downstream 1148629 2092494 ~ 2093678 (+) True G418981
TU482914 other downstream 3359471 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 4229358 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 5297368 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 6408784 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032

Expression Profile