RNA id: CI01000304_01375020_01379551.mRNA



Basic Information


Item Value
RNA id CI01000304_01375020_01379551.mRNA
length 1878
RNA type mRNA
GC content 0.37
exon number 5
gene id CI01000304_01375020_01379551
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 1374871 ~ 1379816 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATAAAATTAATGTTAAGGGAAGGGTTACCTCTGTATCTTGTATGGGGAGATGCTTTTTTTTGTGTGTGTGCCAGCCATCTACACTGTTTTGCAAGATGTTTCCATTATTATTATTTGTACACTTGATGTAATACTTCCACTTTAAACATGTCACAGTCTAAGAAAAGCAGTCAACCAGTAGGTAACAACTTAAGGTTTGTTAGTTTGAACTGCATGGGGGTAAATGAACCAGTCAAACGTAGCAAGGTGTTACATCACCTTCATCACTTAGGGGCACATATTGTTTATCTCCAAGAGACTCATATTAAAACTAAAGACCATCAGTTATTAAAAAGAAGATGGGTTGGTCAAGTTTACCATTCCACATTTCAGGGCAAAGCCAGAGGCACAGCAATCCTTATACACAAATCAGTGCCCTTTGTATGTTCAGATGTTAAAACAGATCCAAATGGTAGATTTGTCATAGTCTCAGGGAGAATTGGCACTACTGCACTGTTGGTTAACATTTACGCCCCTAATTGGGATGACGACAAGTTCTTTAGACGTTTATTTTCCTCACTGCCAGACACTTCTTCATGTTTTATTGTTTTGGGAGGGGACTTTAATTGTTGGCTTAATCCTGACCTTGATCGTTCTTCTCTCAAACATAATTCTTCCTCAAAATCTGCTCGTGTGATTCAGTCTTGTATGGAGAAACTGTCTGTTTCTGACCCTTGGAGTTTTTTAAATCCACGTGGTAAAGCATTTTCTTTCTTTTCCCATGTTCATCAAACATTTACACGCATTGATTATTTTTTAATAGACAACAGACTTATCCCATCAGTGGAATCATGTGATTATAAAGCTATTGTAATATCGGACCATGCAGCAGTTACCATGAATATCTACTTTGAGGGGCTTGATGGCACACGCCACATGCGATTCAATACTCATATGTATAAGGAACGTCAATTATTACAGGCTGAGTTTGATATTCTTTCAACAAGTTATGTGGAGAATTTACTGCTCAGAACTAGATCTATAGGTATTATGAAGAGGGTGATAAAGCAGCTGGAATTACCCATCACTATGGAGGAACTTACCAAAGCTGCTTCCTCTATGCAAGGTGGCAAATGTCCCGAGCAAGATGGCTATCCAGTCAAATTTTATAAGAAGTTTTTGAACAAATTGGGCCCCCTATTAATAGATATATACAATGAATCATTTAAGTCATCAAAGCTCCCACAAACACTTAATCAGGCCTCGATCTCCTTGATCCTAAAAAGAGATAAAGATCCTTTGGACTGCTCTTCATATCGTCCTATTAGTTTGCTTAATGTTGATTTTAAACTTTTATCAAAATTATTGGCGGCTTCAGTTAGGACAAATAATACTCGTTCAGAATACTTCAATCTTTACCGTTCCACCTGCCAAGGATGCCCACTAAGCCCACTTCTTTTTGCTGTTGCCATCGAGCCTCTTTCAGACGCTTTAAAATCTGACCCATTAATAAAAGGTGTAACTAGACTAGGTATTGAGCAAAAGTCCTTGATCTGGGTCATAACATTAGAAAATACACTTTCAGTGGGTCATGTGGTGTTGAATACTTCTGGAGAACTGCTCAGATATTAGATTATAAATATTTGGACTCAGTGAAATGTTGGGAATTGTGGAAAAATCCTCCAGCCAGTTCCTATTTCATTTATTCATGACACAAAGCTGTGATCCTTAGACATCTTAAACATAAGAAAATGAAGTGATAGTTTCAGATAATTTGGGTTAATGATTGTGTGAAATGTAATACCATATTCCAACTCATTAGACTGAATTGTTTTTTCAGCTGGAATCCTCATCCTCATGGAATCTCATTAGTAATTCACATGACAGAAGTTACTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU480917 lncRNA upstream 9312 1365014 ~ 1365559 (+) True G418667
TU480955 lncRNA upstream 42274 1332334 ~ 1332597 (+) True G418691
TU480882 lncRNA upstream 167895 1206710 ~ 1206976 (+) True G418649
TU480279 lncRNA upstream 168461 1205591 ~ 1206410 (+) True G418113
TU480438 lncRNA upstream 194854 1179814 ~ 1180017 (+) True G418261
TU480965 lncRNA downstream 2531 1382347 ~ 1382859 (+) True G418701
TU480966 lncRNA downstream 3198 1383014 ~ 1383342 (+) True G418702
TU480914 lncRNA downstream 58962 1438778 ~ 1447835 (+) True G418666
TU480934 lncRNA downstream 98733 1478549 ~ 1486508 (+) True G418675
TU480947 lncRNA downstream 108739 1488555 ~ 1489020 (+) True G418683
CI01000304_01369056_01372878.mRNA mRNA upstream 1899 1368596 ~ 1372972 (+) True CI01000304_01369056_01372878
CI01000304_01366207_01367994.mRNA mRNA upstream 6869 1366120 ~ 1368002 (+) True CI01000304_01366207_01367994
CI01000304_01337171_01361506.mRNA mRNA upstream 13365 1337171 ~ 1361506 (+) True CI01000304_01337171_01361506
CI01000304_01323957_01324596.mRNA mRNA upstream 48549 1323957 ~ 1326322 (+) True CI01000304_01323957_01324596
CI01000304_01269500_01313976.mRNA mRNA upstream 60239 1268023 ~ 1314632 (+) True CI01000304_01269500_01313976
CI01000304_01392985_01399147.mRNA mRNA downstream 13169 1392985 ~ 1399153 (+) True CI01000304_01392985_01399147
CI01000304_01681164_01706159.mRNA mRNA downstream 301348 1681164 ~ 1706397 (+) True CI01000304_01681164_01706159
CI01000304_01718700_01722248.mRNA mRNA downstream 338512 1718328 ~ 1722276 (+) True CI01000304_01718700_01722248
CI01000304_01829156_01835147.mRNA mRNA downstream 449340 1829156 ~ 1835165 (+) True CI01000304_01829156_01835147
CI01000304_01877287_01890608.mRNA mRNA downstream 495574 1875390 ~ 1890746 (+) True CI01000304_01877287_01890608
TU480282 other upstream 499622 872670 ~ 875249 (+) True G418116
TU480224 other upstream 810420 558092 ~ 564451 (+) True G418059
TU480131 other upstream 1147018 226703 ~ 227853 (+) True G417987
TU481280 other downstream 712678 2092494 ~ 2093678 (+) True G418981
TU482914 other downstream 2923520 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 3793407 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 4861417 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 5972833 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032

Expression Profile