RNA id: TCONS_00021911


Basic Information

Item Value
RNA id TCONS_00021911
length 1760
lncRNA type antisense_over
GC content 0.30
exon number 2
gene id XLOC_009817
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 17548791 ~ 17551059 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCACTGAAACTTTCTTTATTTCATGGCAGCTTTGgcattacaaaaatacaaaaatcatagTTTCCCTATATAGTTGATTTAAGCACCCTTCATAGATTAGTAGAGGTTACAACAGACAGTGAATAAAACCATTCAATATCAAGTGTACTAGGTACTAATCTGGCACAATGAATGCCTAGTATTACTGGAAGAGTCTTAAATAGACATCTATTTTGGATATTAACCCTTTCATAGGAAAACTAAAAACTTGTACATATTTGTTACAATAACAAACACATGTAGGGCTCACTGTAGGTGTCACAACACTTTAACCATTACTATTAAACAAACATTCCAAACTAGGTGAACACAAACAGAGGAATGCATTGATTACCTACAAAAACAGGTTTAAAAGCAAACTtgacacagctgaagtcagaatcactattgccactttttatttaaaacaacactTTGTTTCTTGAACACCAAaagcagttttagtttttaatagcagttCATTAATCTACCCCAGCCCATTTATAATTTTAGTATTTGCTTAAAATGAATTTATGCCCATATTGATCTCCCAAGTCAAAGAAACATTTTAACTAGGAAAACAACAGTTTCTTGAAagcaactgtttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgagagagaaATTATGCTAAAGTGGACAAGTGTGAAACGTAGAAGAGTGTTTCTCGAATACATAGAAAATGGCTTGCTTAAATTTACAGTGTACATTCCTATGAGGAAAAATGTTAAGAAGTGCAGATCGGGAAGACTGTCTAAATATTGGAATGTCTATATAATACAAGTTGTGCTGATGAAGTGCAAAAGCTCTTTACCGCCACCtccaggcttttttttttttaaaaaagactaTAATACTTTTTCTTTAATGTTCGTTTATCGATTTTTAGAATGTttgaagtagaaaaaaaacattgaaggaGACAAAATCATGCTGCATAATTACATGCAtaattataaaacacattttgagAATACATGCTTTTTGACAATACCCCACATATAGtgcttataaaaaatatatagtaaaaaacaAACGCACCATTTGAAATCTGGAATTTTGAAATTAAACTAATATTTTGTGGCAAGATCAAATATATTGATATGCATCATATTAATGGTTCAAAGATGgatatagtaataatatatttaCTGTGAGCCAGTGAGCAATTTTCAAGTTCAGAAACAGCTGCCATTGTGCAAACAGAACAACTGGAGAGAAACAGTGAATTTCATACCCCAGAACCTACAGGAACAAATAATGTAATGTACTGATGATGATTTAATGTTGCATTGCATCATGCAAAGAGCAAATCTGTTTAAATCCAGTGAAATGGTATGAAAAGGTTTAGAGTAGAACTGGCACAATACTAGTATGCATATCTTCGCatgtatctgtgtgtttgtgatgtGTGTCAAAGTTGGTCTGAATGtacccttgatttttttttttactttaaaatgactTTACAATTATAAATCAAGAAGTACAGATaaagaaaagaacaaataaaaaaaagtctgataAAAATATGCAGGATTCATGAAAAAATATATCTGCCAAATTTTATAcagttgtaaaataaaaaaacatactgtgGCTTATTTAAACCTCAGTCTCTATTTATAAAtcatggcattttttttttttcacatttatgcCTTAACTTCCATTTCACTCTTTTTAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021910 lncRNA upstream 246272 17300153 ~ 17302519 (+) True XLOC_009814
TCONS_00021909 lncRNA upstream 544416 17004014 ~ 17004375 (+) True XLOC_009811
TCONS_00019598 lncRNA upstream 613325 16933047 ~ 16935466 (+) True XLOC_009809
TCONS_00021699 lncRNA upstream 834373 16708151 ~ 16714418 (+) True XLOC_009807
TCONS_00021908 lncRNA upstream 899916 16644679 ~ 16648875 (+) True XLOC_009806
TCONS_00021700 lncRNA downstream 49818 17600877 ~ 17601900 (+) True XLOC_009819
TCONS_00021701 lncRNA downstream 114703 17665762 ~ 17666461 (+) False XLOC_009820
TCONS_00021702 lncRNA downstream 114725 17665784 ~ 17666931 (+) True XLOC_009820
TCONS_00021912 lncRNA downstream 118241 17669300 ~ 17670457 (+) True XLOC_009821
TCONS_00021703 lncRNA downstream 951507 18502566 ~ 18512199 (+) True XLOC_009826
TCONS_00019607 mRNA upstream 81329 17389116 ~ 17467462 (+) False XLOC_009815
TCONS_00019608 mRNA upstream 113144 17389135 ~ 17435647 (+) True XLOC_009815
TCONS_00019606 mRNA upstream 295402 17252487 ~ 17253389 (+) True XLOC_009813
TCONS_00019605 mRNA upstream 447350 17089114 ~ 17101441 (+) True XLOC_009812
TCONS_00019602 mRNA upstream 556983 16977786 ~ 16991808 (+) False XLOC_009810
TCONS_00019611 mRNA downstream 163605 17714664 ~ 17719700 (+) False XLOC_009822
TCONS_00019612 mRNA downstream 164184 17715243 ~ 17719694 (+) False XLOC_009822
TCONS_00019613 mRNA downstream 164318 17715377 ~ 17719792 (+) True XLOC_009822
TCONS_00019614 mRNA downstream 212789 17763848 ~ 17798412 (+) False XLOC_009823
TCONS_00019615 mRNA downstream 212836 17763895 ~ 17797950 (+) True XLOC_009823
TCONS_00019609 other upstream 31709 17516948 ~ 17517082 (+) True XLOC_009816
TCONS_00019587 other upstream 1394333 16154324 ~ 16154458 (+) True XLOC_009803
TCONS_00019585 other upstream 1681626 15866224 ~ 15867165 (+) True XLOC_009800
TCONS_00019534 other upstream 4107158 13424548 ~ 13441633 (+) False XLOC_009767
TCONS_00019535 other upstream 4107196 13424551 ~ 13441595 (+) False XLOC_009767
TCONS_00019610 other downstream 19751 17570810 ~ 17570934 (+) True XLOC_009818
TCONS_00019630 other downstream 1514286 19065345 ~ 19128471 (+) False XLOC_009830
TCONS_00019642 other downstream 2153365 19704424 ~ 19704538 (+) True XLOC_009838
TCONS_00019651 other downstream 2616775 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019655 other downstream 2745764 20296823 ~ 20304275 (+) True XLOC_009845