RNA id: CI01000304_01897341_01897684.mRNA


Basic Information

Item Value
RNA id CI01000304_01897341_01897684.mRNA
length 2288
RNA type mRNA
GC content 0.34
exon number 2
gene id CI01000304_01897341_01897684
representative False

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 1894422 ~ 1898210 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTAAACATTTCTTTTAAACAACATTTCAACACTTTCTTCATTTAACATTTTTTATAACTTTATACAGTCTTTATAAAGTCACATTATGCAGAGCCAGTGCTTGCTTTGAACTTTTGTAATATCTAAGGATAAAGGATTGTTATCAAAAAGCTGTTTCTGAATGAATGTTTAATATTAAAAAAAAAGTTCACTAAATAATTTTTATTAAAATAGTCAAATAAAATTCATTGCCAGAAAACAAGACCTAATTGATTTATTTTAATATACTTTAGAACTACCATTTTTTTAAAGGGTCATGAACTGCTTTTTTATTTTATAATGTTCTATGAGATCTACTAATAATGTTAGCAAGATTTTTACGTCAAATAAATAAATAAATAAATAAATAAATAAAACAATTTAGGAGTAATATAGACTATGTTCTATCCTGTTTTTTTGTTGTTGTTGTTGTTTTGTTTTGTTTTTTTTTTTGCCTTGAATTTCGCCTTGTGCAGGTGGAAACACAGAAAGCCAACAGATGAGGCATGGGCTTCCGCTATATGCTAATGCACATAGTGGACTTTGTGGAGAAGCATGGCGAATGCCATGCAAATGTCAGTAAAAGTGGCCTGTTCAGGGTCAGCGGGTCAGTTAAACGCTGTCAGGAGCTGAGGAAAAGTTTCGATCAAGGAGGCTTTCCGAGGTTTGACAGTGGGGATATTTCTACTCTGGCCTCCTTATTAAAACTTTTCCTCAGGGAGTTACCCAGTGGTTCAGGATCCACACAGGACACAGCTGATGAAGGTGTTCGGGGGTAAGTGATGCTGGAGTGGTGATAAGTAATTCTTTTATCTCTCAGATTCAAAAGAGGGAGAAGTATATCTGGCAACAAGGAAGATCGAGCAGTCTTCCTGAGGAGCATAAACATCCAGTGCTACCTGATGTTCTTCTCCAGAGTGCTCAGGACCTCAGACTGGGCCGAAGGTTTACCTTCCAACAAGACAATGACCCTAAGCACACAGCTAAAATAACGAAGGAGTGGCTTCACAACAACTCCGTGACTGTTCTTGAATGGCCCAGCCAGAGCCCTGACTTAAACCCAATTGAGCATCTCTGGAGAGACCTAAAAATGGCTGTCCACCAACGTTTACCATCCAACCTGACAGAACTGGAGAGGATCTGCAAGGAGGAATGGCAGAGGATCCCCAAATCCAGGTGTGAAAAACTTGTTGCATCTTTCCCAAAAAGACTCATGGCTGTATTAGATCAAAAGGGTGCTTCTACTAAATACTGAGCAAAGAGTCTGAATACTTAGGACCATGTGATATTTCAGTTTTTCTTTTTTACTAAATCTGCAAAAATGTCAACAATTCTGTGTTTTTCTGTCAATATGGGGTGCTGTGTGTACATTAATGAGGAAAAAAAATGAACTTAAATGATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAATGAACTTAAATGATTTTAGCAAATGGCTGCAATATAACAAAGAGTGAAAAATTTAAGGGGGTCTGAATACTTTCCGTACCCACTGTATGTATTAGTACATGTATAAGTTATGTCATAAAAGGAATATGGGTGTCTGGTATTTTAATATTTTTAGTTGTACAGTATTTAGTAAGGTATTTAGGAAGACATTTTTATTTCTGTATGTTCATATTACTGTGCATCCAAGAAAATTGTCACACATTTTTTTTTTTTTTTTAAATGCTCATTTATTTCTTAAAGCATTACTGGACGTAATACTATTGTATTGTAGCCGTACATTTCCATTTGCTCAGCATCATTTATCAATATTATCAAACTGAGGAAGAGCGATATTCCAATGTGTCATGCCATGCTGTTCAGTTATCAAGCTTGTGCAAAGTCTGGAGCGACTGAATCAAGCTGACAAATCACAATGAATACAATGAATTCACATAGGACAAAAGAAACATGGAGAAAACAATCTTAAAAGATTACTGGTTGCATTTTAATTGCTTAGACTGTCACACAGGTAATGACATGCAAAATATGCTTACATTTATCTGATGGTGTGAAGTAAACACTATCCACAAATAGAATGAATGACAGCTTGTTTTAACACTTTAACATTTTTAAATTTTTAAACATAAACTCAAGGTTAAAAATTAGAATTTGGCAATTAGATAAAGACAGAAACTCAGTAAAGGCCCCAATATACTTCAAGCGAAATCGAAGAAGAACTGGTGTGACACCATTTTGAACAAAATCAGGCCAAAACAAAGTTCGAAGTATATAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481651 lncRNA downstream 135555 1759956 ~ 1760297 (-) True G419324
TU481615 lncRNA downstream 146888 1746792 ~ 1748964 (-) True G419296
TU481604 lncRNA downstream 251573 1644045 ~ 1644279 (-) True G419285
TU481595 lncRNA downstream 341447 1549416 ~ 1554405 (-) True G419276
TU481500 lncRNA downstream 530293 1365053 ~ 1365559 (-) True CI01000304_01365055_01365447
TU481749 lncRNA upstream 4431 1902641 ~ 1903444 (-) True G419387
TU481712 lncRNA upstream 29270 1927480 ~ 1958166 (-) True G419358
TU481764 lncRNA upstream 169033 2067243 ~ 2067756 (-) True G419402
TU481716 lncRNA upstream 189914 2088124 ~ 2105659 (-) True G419360
TU481715 lncRNA upstream 190682 2088892 ~ 2114397 (-) True G419360
CI01000304_01862046_01862663.mRNA mRNA downstream 33189 1861714 ~ 1862663 (-) True CI01000304_01862046_01862663
CI01000304_01839482_01853648.mRNA mRNA downstream 42059 1839470 ~ 1853793 (-) True CI01000304_01839482_01853648
CI01000304_01764213_01809758.mRNA mRNA downstream 86094 1763630 ~ 1809758 (-) True CI01000304_01764213_01809758
CI01000304_01573427_01639447.mRNA mRNA downstream 256013 1572399 ~ 1639839 (-) True CI01000304_01573427_01639447
CI01000304_01560571_01565345.mRNA mRNA downstream 327576 1560368 ~ 1568276 (-) True CI01000304_01560571_01565345
CI01000304_01937620_01968424.mRNA mRNA upstream 39410 1937620 ~ 1968936 (-) False CI01000304_01937620_01968424
CI01000304_01970027_01971430.mRNA mRNA upstream 71817 1970027 ~ 1971430 (-) True CI01000304_01970027_01971430
CI01000304_01975851_01976768.mRNA mRNA upstream 77456 1975666 ~ 1977367 (-) True CI01000304_01975851_01976768
CI01000304_01977963_01994161.mRNA mRNA upstream 79648 1977858 ~ 1994161 (-) True CI01000304_01977963_01994161
CI01000304_02041045_02041482.mRNA mRNA upstream 142720 2040930 ~ 2041497 (-) True CI01000304_02041045_02041482
TU481692 other upstream 331174 2229384 ~ 2236106 (-) False G419353
TU481693 other upstream 331174 2229384 ~ 2236106 (-) False G419353
TU481701 other upstream 364292 2262502 ~ 2265185 (-) False G419354
TU481700 other upstream 364528 2262738 ~ 2265340 (-) False G419354
TU481699 other upstream 364882 2263092 ~ 2265185 (-) False G419354

Expression Profile